Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1517 ATGGAGAACAATTCAGCAGTGATTGCAAAGAGAGTGTGGAAGATAATACGTGTCGCCTTCTTCATGTTGAGAAAAGGCATATCAAAGGGCAAGCTAATGATGCACCTTAACGTCATGCTCAAACGCCGGAGCAAGCTCGCCGGAAAAGCCATCACCAACCTCATCTTCCACCACCCCCACCATGCCGGAGTCCCCGGCAACGACCTCCAGTTCTCAGCCGCCAGGGAGTACGAGTTCAGCTGCAGCAACACCCCCAACAACTTCTTTGCCACCATTGGCAACGGCAGCAAGCGCCACCGCCACAACCCTTTCTTCACGTGCGCTCACGCCCCGCCCACTTTCGAGGACGACGCCGTGACCGTCAATGCCGTCAAGGGCGTGTTGGAGATGCTGAACAAGGAGACGGCGGTGGAGGCGGCGCCGGCCGCCGCAGTTTGTAGCTCTGTGGTGAGGCAGCTTATTAGGGTTACGGACTCTCCGTTCCCACTTCGTGAGTACGAGGATGACAAGGACAACCAAGTGGACAAGGCTGCGGAAGAGTTCATAAAGAGGTTTTACAAAGACTTGAAGAAGCAAACTTGA 582 0.5498 MENNSAVIAKRVWKIIRVAFFMLRKGISKGKLMMHLNVMLKRRSKLAGKAITNLIFHHPHHAGVPGNDLQFSAAREYEFSCSNTPNNFFATIGNGSKRHRHNPFFTCAHAPPTFEDDAVTVNAVKGVLEMLNKETAVEAAPAAAVCSSVVRQLIRVTDSPFPLREYEDDKDNQVDKAAEEFIKRFYKDLKKQT* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1517 193 Pfam Cotton fibre expressed protein 171 192 IPR008480 -
Pvu10g1517 193 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 1 192 - -
Pvu10g1517 193 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 1 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1517 Pvu-Chr10 41728560 41729341 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1517 - - gmx:100801941 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1517 10 41728560 41729341 Pvu5g1720 5 39169772 39170692 ECH
Pvu2g3185 2 47130193 47131520 Pvu10g1517 10 41728560 41729341 ECH
Pvu4g1799 4 45191505 45192407 Pvu10g1517 10 41728560 41729341 ECH
Pvu10g1517 10 41728560 41729341 Pvu10g1517 10 41728560 41729341 ECH
Pvu5g1720 5 39169772 39170692 Pvu10g1517 10 41728560 41729341 PCT