Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1553 ATGGAACACAATGCGTTTTTTCTCATGCTTGTTGCTATTGTGACGACATTAGCATCACTTGCTGTTGCTGAACCTGTTCCTGTTGCACCTATTCTCGATGTTTCTTCACTCAATCGTACCAGTTTTCCACCAGGATTCGTTTTTGGGACAGCTTCTGCGTCTTACCAGTATGAAGGTGCGGCAGAGGAAGGTGGCAAAGGAACAAGTGTATGGGATACTTTCACCCATAAACATCCAGATCTGATACAAGATAGGAGTAATGGAGATGTTGCAGTTGATCAATATCACCACTACAAGGAAGACGTTGAAATCATGAAATATATGAATTTGGATGCATACAGATTCTCCATTTCTTGGCCAAGAATCCTCCCAAAAGGAAAGCTTAGTGGAGGTATAAACCAAGAAGGAGTTAAATATTACAACAACCTCATCAACCAACTACTGGCTCATGGTATAAAACCATTTGTCACCCTCTTTCATTGGGATCTTCCACAGGCTTTAGAAGACGAGTATGGTGGTTTCCTCAGTCCTTATATTATAAATGACTTTCAAGATTATGCAGAACTTTGCTTTAAAGAGTTTGGAGATAGAGTTAAGTATTGGATTACTTTAAATGAGCCATGGAGTTATAGTACATTTGGATATGCAAGTGGGTTAATGCCACCAAATCGATGTTCTAAATGGTTAGATCCCAAATGTGTTCATGGTGATTCTGGGAAAGAACCTTACTTAGTTTCACATCACCTTCTTCTTGCTCATGCAGTCACTGTTCAAGTCTACAGAAAAAAGTATCAGGTATCTCAAAAAGGAGTGATAGGCATAACCCTTGTGTCCAATTGGTTTGAGCCATTGTCAGAAAACAAGTCAGATAAAAGTGCTTCTGAGCGATCACTTGATTTCATGTTGGGATGGTTTATGGGACCATTAACATCAGGAAAATATCCACAAAGCATGCAATCTCTTGTTGGTAAACGATTGCCAAAGTTCTCCAAACATGAAATCAAACTTGTCAATGGTTCATTTGATTTTATTGGATTAAACTATTACACCTCAAATTATGTTGCCAATGCACCTAAGCTTGTCAATGTCAAACCTAATTATGCTACAGATCCCAGTGCCAACCTTACAACTGAACGCAATGGGATTCCAATAGGTCCACAGGCTGCTTCAAGCTGGTTATATGTATATCCCCGAGGCATTAGAGAATTATTGTTGTACACCAAAGAAAAGTACAACAATCCATTAATTTACATAACTGAAAATGGTATTGATGAGTTCAATGATCCAACACTATCACTAGAAGAGTCTCTTCTAGATACGTTTAGGATTGATTATCATTATCGACATCTTTTTTATCTTCATTCAGCAATTAGGGATGGTGTGAATATAAAAGGATATTTTGCATGGTCATTGCTGGACAACTTTGAATGGAACAACGGTTACACAGTACGATTTGGAATCAACTTTGTGGATTACAACAATGACTTCAAACGACATCAAAAGCTCTCTGCAAAATGGTTTAGGAATTTTCTAAAAAAATATTAG 1545 0.378 MEHNAFFLMLVAIVTTLASLAVAEPVPVAPILDVSSLNRTSFPPGFVFGTASASYQYEGAAEEGGKGTSVWDTFTHKHPDLIQDRSNGDVAVDQYHHYKEDVEIMKYMNLDAYRFSISWPRILPKGKLSGGINQEGVKYYNNLINQLLAHGIKPFVTLFHWDLPQALEDEYGGFLSPYIINDFQDYAELCFKEFGDRVKYWITLNEPWSYSTFGYASGLMPPNRCSKWLDPKCVHGDSGKEPYLVSHHLLLAHAVTVQVYRKKYQVSQKGVIGITLVSNWFEPLSENKSDKSASERSLDFMLGWFMGPLTSGKYPQSMQSLVGKRLPKFSKHEIKLVNGSFDFIGLNYYTSNYVANAPKLVNVKPNYATDPSANLTTERNGIPIGPQAASSWLYVYPRGIRELLLYTKEKYNNPLIYITENGIDEFNDPTLSLEESLLDTFRIDYHYRHLFYLHSAIRDGVNIKGYFAWSLLDNFEWNNGYTVRFGINFVDYNNDFKRHQKLSAKWFRNFLKKY* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1553 514 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 46 60 IPR033132 -
Pvu5g1553 514 Gene3D Glycosidases 24 513 - -
Pvu5g1553 514 PANTHER GLYCOSYL HYDROLASE 2 513 IPR001360 GO:0004553|GO:0005975
Pvu5g1553 514 Pfam Glycosyl hydrolase family 1 40 513 IPR001360 GO:0004553|GO:0005975
Pvu5g1553 514 PRINTS Glycosyl hydrolase family 1 signature 340 354 IPR001360 GO:0004553|GO:0005975
Pvu5g1553 514 PRINTS Glycosyl hydrolase family 1 signature 416 424 IPR001360 GO:0004553|GO:0005975
Pvu5g1553 514 PRINTS Glycosyl hydrolase family 1 signature 439 450 IPR001360 GO:0004553|GO:0005975
Pvu5g1553 514 PRINTS Glycosyl hydrolase family 1 signature 460 477 IPR001360 GO:0004553|GO:0005975
Pvu5g1553 514 PRINTS Glycosyl hydrolase family 1 signature 484 496 IPR001360 GO:0004553|GO:0005975
Pvu5g1553 514 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 2 513 - -
Pvu5g1553 514 SUPERFAMILY (Trans)glycosidases 30 512 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1553 Pvu-Chr5 37788284 37795351 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1553 6 513 Glycoside Hydrolase AT5G44640 51.277 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1553 - K01188 gmx:100811884 876.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1553 5 37788284 37795351 Pvu5g1553 5 37788284 37795351 ECH
Pvu5g1553 5 37788284 37795351 Pvu11g0579 11 4821539 4825564 PCT
Pvu11g0578 11 4814120 4818981 Pvu5g1553 5 37788284 37795351 PCT