Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0578 ATGGTAATCACAATGAACATGTTTTCGCTGCTCTGCGTTTTTGTTACCTCCTCCATCATCACCCTCACTCACTCCAAGGCCGTTCCACCCATTCTTGACGTTTCTTACCTCAACCGGAGCAGTTTCCCCAAAGGCTTTGTTTTCGGGACAGCATCCGCTTCATACCAGTATGAAGGTGCTGCAAGGGAAGATGGAAAAGGACCGAGTATATGGGATACTTTCACTCACAAATATCCAGAAAAAGTAAAAGATCGGAGTACTGGAGACGTAACGACAGACCAATATCATCGGTATAAGGAGGATGTTGGAATCATGAAGGGCATGAATTTGGATGCTTATAGATTCTCCATTTCTTGGCCTAGGGTATTACCGAAAGGAAAGCTCTCTGCAGGAGTAAACAAGGCAGGAATAAACTACTACAATAACCTCATCAACCAGCTATTGAAGAATGGTATGGAACCATATGTGACCCTTTTTCATTGGGACGTTCCCCAGGCCTTGGACGATGAGTATGGTGGTTTTTTAAGCCCTCACATTGTAGATGATTTTAGGGACTTCGCTGAACTATGCTTCAAGGAATTTGGTGATAGGGTGAAACATTGGATTACTTTGAATGAACCAAGCACTGTGGCCTTCGATGGTTATACAGTTGGAGATCATGCACCAGGTCGGTGTTCTGATTGGCAAAAACTGAATTGCACAGGTGGTGATTCAGGAACTGAGCCATATTTGGTTTCGCACTATCTACTTCTTTCTCATGCTGCTGCTGCTAACTTGTACAAGACCAAGTATCAGGAATCACAAAAGGGTTTAATAGGGATTACCTTGAACAGTGACTGGTATTTGCCGGCTAGTGATGACATAGCAGATATGGACGCTGCCCGTCGAGCCCTTGACTTCAGGTTTGGGTGGTATATGGATCCTCTGACAAAAGGTGAGTATCCAACAAGCATGCGACATTTGGTGGGAAACCGTCTACCAAGGTTCTCCAAAGAAGAAGCTAAACAACTTAAGGGGTCGTTTGATTTTCTGGGTCTAAACCACTATTCAACCTTTTATGCTGCCAATGCACCTGATCTACGTGGTTCCAAACCATCCCTACTGAAGGATTCTCTTGCTAATGTTACAAATCAGCATGACGGCCGGATCCTTTGTCCATTAGCTGCTTCGAACTGGCTATGCGTTTATCCACGAGGATTACGACAGCTATTGGTTTACATCAAGAAGAATTACAACAATCCCGTAATTTACATTACTGAAAATGGTTTTGATGAGTTCAATGATCCAACACTATCACTTGAAGAAAAGCTTTTAGATACCAACAGAGTTGATTACTTATATCGTTATCTTTATTATGTTAAAATGGCAATCAGGGATGGTGTGAAGGTGAAAGGATATTTTGTATGGTCATTTCTGGACAACATGGAGTGGAACTCTGGCTATACTGTGCGATTTGGATTCATCTTTGTGGATTTCAAAAACGGTTTGAAAAGATACCCAAAACTCTCAGCACAATGGTTCAAGAACTTTCTCAGCAGATCTTAG 1545 0.4246 MVITMNMFSLLCVFVTSSIITLTHSKAVPPILDVSYLNRSSFPKGFVFGTASASYQYEGAAREDGKGPSIWDTFTHKYPEKVKDRSTGDVTTDQYHRYKEDVGIMKGMNLDAYRFSISWPRVLPKGKLSAGVNKAGINYYNNLINQLLKNGMEPYVTLFHWDVPQALDDEYGGFLSPHIVDDFRDFAELCFKEFGDRVKHWITLNEPSTVAFDGYTVGDHAPGRCSDWQKLNCTGGDSGTEPYLVSHYLLLSHAAAANLYKTKYQESQKGLIGITLNSDWYLPASDDIADMDAARRALDFRFGWYMDPLTKGEYPTSMRHLVGNRLPRFSKEEAKQLKGSFDFLGLNHYSTFYAANAPDLRGSKPSLLKDSLANVTNQHDGRILCPLAASNWLCVYPRGLRQLLVYIKKNYNNPVIYITENGFDEFNDPTLSLEEKLLDTNRVDYLYRYLYYVKMAIRDGVKVKGYFVWSFLDNMEWNSGYTVRFGFIFVDFKNGLKRYPKLSAQWFKNFLSRS* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0578 514 Pfam Glycosyl hydrolase family 1 40 512 IPR001360 GO:0004553|GO:0005975
Pvu11g0578 514 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 46 60 IPR033132 -
Pvu11g0578 514 SUPERFAMILY (Trans)glycosidases 29 512 IPR017853 -
Pvu11g0578 514 PANTHER BETA-GLUCOSIDASE, PUTATIVE-RELATED 31 513 - -
Pvu11g0578 514 Gene3D Glycosidases 30 512 - -
Pvu11g0578 514 PRINTS Glycosyl hydrolase family 1 signature 340 354 IPR001360 GO:0004553|GO:0005975
Pvu11g0578 514 PRINTS Glycosyl hydrolase family 1 signature 416 424 IPR001360 GO:0004553|GO:0005975
Pvu11g0578 514 PRINTS Glycosyl hydrolase family 1 signature 439 450 IPR001360 GO:0004553|GO:0005975
Pvu11g0578 514 PRINTS Glycosyl hydrolase family 1 signature 460 477 IPR001360 GO:0004553|GO:0005975
Pvu11g0578 514 PRINTS Glycosyl hydrolase family 1 signature 484 496 IPR001360 GO:0004553|GO:0005975
Pvu11g0578 514 PANTHER GLYCOSYL HYDROLASE 31 513 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0578 Pvu-Chr11 4814120 4818981 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0578 8 513 Glycoside Hydrolase AT5G44640 51.373 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0578 - K01188 var:108339449 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0578 11 4814120 4818981 Pvu11g0578 11 4814120 4818981 ECH
Pvu11g0578 11 4814120 4818981 Pvu5g1553 5 37788284 37795351 PCT