Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1538 ATGGCTTTTCTATTTGCTTTTGTTGCAATTGTGCTGTGGGGTTCCGCTGAGGGTAAAGAGTGCACAAACAACATTGCTCAATCACACACTTACCGTTACCAGTTATTAACATCCATGAATGAAACTTGGAACATAATCTCTCATTATAATTTGGCTCCAAAGGGTGACCATGATCACATTTGGGCTGATTTGGTACCAAGGAAGTTGTTGAAAGAGGAATACCAACATGATTGGGATGTGATGTTGAGGAAAATTGAGAAAGTGGGTGTCTTGAAGGCACCCCACCAACGCCAAGATTTTCTCAAACAAGTGTCTCTGCATGATGTGAGATTGCATGAGGGTTCAGTTCATGCTCGGGCACAACAGACAAACTTAGAGTATCTGTTGATGTTGGATGTAGACAGGTTACTCTGGAGCTTTAGGAACACAGCTGGTCTTCCAACTCCTGGAACACCATATGGAGGGTGGGAAGATCCAAAAATAGAGCTACGGGGTCATTTTGTTGGGCACTACTTGAGTGCATCAGCTTTAATGTGGGCCAGCACACATAATGATAGATTGAAGAAGAAAATGTCAGCCCTTGTTGCCAATCTCTCAATCTGTCAGGAGAAAATTGGTACAGGATATCTCTCTGCCTTTCCATCTGAATTTTTTGATCGATTTGAAGCTACTGAGCATGTTTGGGCTCCCTATTACACCATTCACAAGATATTGGCTGGCCTTCTGGATCAACATTCTATAGCTAGAAATCCTCAAGCTCTAAATATGGTGAAATGGATGGTAGATTACTTTTACAACAGAGTGCAGAATGTTATAACGAAATTTAGTATTAGTAGACATTATCAATCACTGAATGAGGAAACTGGAGGCATGAATGATGTCCTTTACAAACTATACAGCATAACGGGAGATCAAAGGCATCTACTGTTAGCTCACCTTTTTGACAAGCCATGCTTTTTAGGTTTGCTTGCAGTGAAGGCTAATGACATAGCTAATTTTCATGCTAACACACATATCCCAGTGGTTGTTGGATCTCAAATGCGGTATGAAGTCACTGGTGATCCACTCTATAAGGAAATAGGAACATTCTTTATGGATCTTGTTAACTCTTCTCATACTTATGCAACTGGAGGGACATCAGTGGGCGAATTTTGGAGTGATCCAAAGAGAATTGGAGACACCCTAGAATCAACCGACAATGAGGAATCATGCACCACATACAATATGTTGAAGGTTTCACGCCACCTTTTTAGATGGTCCAAAAAGGTATCATATGCAGATTACTATGAGCGTGCCTTAACAAATGGTGTTTTAAGCATTCAAAGAGGAACAGAACCTGGAGTGATGATATATATGCTTCCTCAAGGTCGCGGGGTTTCCAAGGCTAAAACTAGCCTTGGTTGGGGAACGAAGTTTGATAGTTTCTGGTGCTGCTATGGAACAGGAATCGAATCCTTCTCAAAGCTGGGAGATTCTATCTATTTTGAAGAGGGAGGGAAAAATCCTACTCTTTACATTATCCAGTACATATCAAGCTTATTCAATTGGAAGTCTGGGCAAATTATTGTTAATCAGACTGTTGTTCCAGCTGTTTCATGGGATCCTTTCCTACGAGTGTCATTTACATTTTCTCCAGCTAAGAAAACTGGTGCTTTGTCTACAATTAACCTCAGACTACCAACTTGGACGCACAAGGATGGTGCAAAGGGTGTATTGAATAATGAGTCTTTATCTCTGCCAACCCCAGGAAATTTTTTGTCCATCACCCGAAAATGGAATGCTGGTGACAAACTAAGCCTTCAATTTCCCATGACCCTTAGAACCGAGGCCATAAAAGATGACAGGTCTCAATATGCCTCAATTCAAGCAATTCTTTATGGTCCTTATGTTCTTGCTGGTCACACAACTGGTGATTGGGACATCAAAGCTGCACCAAATGCATCTATAGAAGACTGGATTACTCCAATTCCAGCCAGCTACAACAGTCAGTTATTCTATTTTTCCCAAGCCTTTGCCAACTCAACTTATGTTTTAACAAACTCCAACCATCCATTAGCAATGCAAAAATTACCTGTGCCTGGAACTGATTTGGCCCTTCATGCAACTTTTAGAGTTATCCCAGGAAAATCTGCCACAAAGTTTACCACATTGACAGATGCTGTTGGTAAAACAGTAATGCTAGAACCGTATGATCATCCGGGAATGAGAGTGATTCACCAAGGAATGGAACATCCTCTTACAGTAGCAGGCTCTTCCTCAGGTTGCTCCTCTTGTGTTTTTGTTGTGGTCCCAGGATTGGATGGAAGAAAGGAAACCATATCTTTGGAATCAAAAAGCTATAATGGTTGCTTTGTGCATAGTGGTTTGCATTCTGGTAGAGGAGTGAAACTCAGTTGCAAGACTTCTTCTGATGCTACATTTAAAGAATCAGCAAGTTTTTTTGGCAAAAGAGGAATAAGCAAATATAATCCTATCAGCTTTGTGGCCAGAGGAGCAAACAAGAATTTTCTTCTGGAGCCGTTATTGGCCTTCAGAGATGAGTCTTATACACCTTATTTCAACATTAAAGGTTGA 2574 0.4095 MAFLFAFVAIVLWGSAEGKECTNNIAQSHTYRYQLLTSMNETWNIISHYNLAPKGDHDHIWADLVPRKLLKEEYQHDWDVMLRKIEKVGVLKAPHQRQDFLKQVSLHDVRLHEGSVHARAQQTNLEYLLMLDVDRLLWSFRNTAGLPTPGTPYGGWEDPKIELRGHFVGHYLSASALMWASTHNDRLKKKMSALVANLSICQEKIGTGYLSAFPSEFFDRFEATEHVWAPYYTIHKILAGLLDQHSIARNPQALNMVKWMVDYFYNRVQNVITKFSISRHYQSLNEETGGMNDVLYKLYSITGDQRHLLLAHLFDKPCFLGLLAVKANDIANFHANTHIPVVVGSQMRYEVTGDPLYKEIGTFFMDLVNSSHTYATGGTSVGEFWSDPKRIGDTLESTDNEESCTTYNMLKVSRHLFRWSKKVSYADYYERALTNGVLSIQRGTEPGVMIYMLPQGRGVSKAKTSLGWGTKFDSFWCCYGTGIESFSKLGDSIYFEEGGKNPTLYIIQYISSLFNWKSGQIIVNQTVVPAVSWDPFLRVSFTFSPAKKTGALSTINLRLPTWTHKDGAKGVLNNESLSLPTPGNFLSITRKWNAGDKLSLQFPMTLRTEAIKDDRSQYASIQAILYGPYVLAGHTTGDWDIKAAPNASIEDWITPIPASYNSQLFYFSQAFANSTYVLTNSNHPLAMQKLPVPGTDLALHATFRVIPGKSATKFTTLTDAVGKTVMLEPYDHPGMRVIHQGMEHPLTVAGSSSGCSSCVFVVVPGLDGRKETISLESKSYNGCFVHSGLHSGRGVKLSCKTSSDATFKESASFFGKRGISKYNPISFVARGANKNFLLEPLLAFRDESYTPYFNIKG* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1538 857 Gene3D - 716 840 - -
Pvu5g1538 857 Pfam Beta-L-arabinofuranosidase, GH127 108 632 IPR012878 -
Pvu5g1538 857 PANTHER PROLINE-TRNA LIGASE (DUF1680) 9 856 - -
Pvu5g1538 857 SUPERFAMILY AbfB domain 728 838 IPR036195 GO:0046373|GO:0046556
Pvu5g1538 857 PANTHER - 9 856 - -
Pvu5g1538 857 Coils Coil 184 204 - -
Pvu5g1538 857 SUPERFAMILY Six-hairpin glycosidases 162 460 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1538 Pvu-Chr5 37657125 37663216 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1538 K09955 - gmx:100791803 1301.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1538 5 37657125 37663216 Pvu5g1538 5 37657125 37663216 ECH
Pvu5g1538 5 37657125 37663216 Pvu11g0594 11 4968003 4974688 PCT
Pvu11g0593 11 4957673 4964100 Pvu5g1538 5 37657125 37663216 PCT