Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1496 ATGGTGTTGCAGAAGAGGTTATATTATAGCTTTAATGGATATCAGGTGCCAACCAAGCGCCGAGCTACTAGATCAGCTAGGAGGAACGCTACATTTCAAAGAAGGTTGGAAGACAATCAAATGTGTGCATTTGACTTATTGGCCACCGTAGCTGACAATTTATTGCAAGAGAAACAGAATCCGACCACATATAGTGATAGGTCATTGGGAAAAGATAGGGAGGGATTTGTAAAAGAGGAGTGTCAGAATGCAAATAAACCATTAAAAACTGAGCTTTCTGATGAAGCAAGTTGTGACAGAAGATGTCAGCATGAATTTGTTAAAGAAGAATGCACAGATGCAAATAAACCATTAAAACCTGAGCTTTCAGACGAAGGAAGTAGTGATAGAAAAGGTTTCTCTAATATTTCTTCCCAAGTATACAATCAAAATTGTTGTTTGAAGGAATTCCCCATTCATGAAATTGAAGGCCATTCATGCATTGCTTCTATAGTAACAAGTTCTAGTTGCTCAGAGAAGTTTGTTGCTGAAAAACTGGTGGATGGGAAAGGCCAAAATGGAACGGAAAATTTAGCTAGCAAAGTTGAATTAGGTTCCTCTGGAAGTCCAGAGAGTATTGGTTGCAAGTTAGACGGTGATGATGAAAGTAAAGTAAAAGATGTTAAGTTTGGGAAGGTTCCCATGGATACTGGAACTGGGTTGTGCTGTTCTGAGGATCCCTTGGATGAAAAACCTCCAGCACTGGTAAGTTCTTGTGGCAATGCCAAGTTGTCTGGGTATGATGACAGCATGCCTCATAGCTCATTGTCCAAAGGCTGTGACAATGTGCTAGTAGATAGTAGAGATGATGACGAAAACTTTTCTGGGTGTGCTCACCCTAGTAACAAAATAAAGTCCACTAGACCAATTACTTGTATAGATGATAGAAAAATAAAGAAAAGATTGGCTTCAAAATATCATAAAGCTGCTCAAGAATCCAAGCCTGATAAGTTATCTAATAGTGTTTTGGATGGAAATTTGAAGCCAGTTTACAGCAGTAGGAAGAACTACTATAAAAGCCAAAGATCTCAAATGAACATTCCTTTCAAAAAGAGGAAGCTTTTTAAATGTGACTCTGATACAAATTCTAACGGATATATCAGAAGTGGTGACACTTATTTTTCACTCAAGAATGAAACAAATCAAAGTGTTTCATATTCATCTTCTGGAATGAGCAAAGATCATGGAACATCATCCTTGGGACACTCTGCCTTACGATCTAGAGATTCTCATGTGAAGCTTAGGATTAAATCATTTAGAGTGCCCGAGCTTTTAATTGAGATTCCAGAAACTGCAACCATTGGGTCCTTAAAGAGGACAGTGATGGAGGCAGTGACTGCAGTACTTGGAGGTGGATTACGTGTGGGAGTGATTCTCCATGGAAAGAAGGTTAGAGATGACAATAAAACTCTACTCCAGACTGGAATTTCTCATGATAACCACTTGGATGCTTTGGGATTCGCCCTGGAGCCTAATTTTTCACAAAATCTACCACCTGCATGTGCAACTAGTTCTCTTCGCATTCCTAGTGCGGATATGCCTCAACCTTTTATAGGGTATCCTTCAAGTCCTGCTGTAATTCATCAAAGGATTCAGGGCTTTTCTAACACGTTAGCTGAGCATCAAGCAACAGGTTTAGGTAACCTTGTCGAAAGTGATCATGATTCAGCTCCTTCTCCCATCAACACATCAGGTGAAAAAAAATTGTCAGATTCTAAAGAACTTATTACTGTTCCTGAAATGGGTATGGAGGCACTAGCCGTGCTACCTGGGCATCAAAAGTCAAAGCGAACTGAGATTGCACAGCGCCGAATTCGTAGGCCTTTTTCCGTTGCTGAAGTGGAAGCATTGGTCCAAGCAGTTGAGAAACTTGGAACTGGAAGGTGGCGTGATGTTAAGCTTCGTGCTTTTGATAATGCAAAGCATCGAACATACGTGGATTTGAAGGATAAATGGAAAACACTGGTGCACACAGCAAGAATAACCCCTCAGCAAAGGAGGGGAGAGCCTGTTCCTCAAGAACTCTTGGATAGGGTCCTAACTGCCCATGCATATTGGTCCCAGCAGCAGACTAAGCAACAGCTCAAGCACCACTCAAAACCTTGCCTTCTCCTTTAA 2157 0.408 MVLQKRLYYSFNGYQVPTKRRATRSARRNATFQRRLEDNQMCAFDLLATVADNLLQEKQNPTTYSDRSLGKDREGFVKEECQNANKPLKTELSDEASCDRRCQHEFVKEECTDANKPLKPELSDEGSSDRKGFSNISSQVYNQNCCLKEFPIHEIEGHSCIASIVTSSSCSEKFVAEKLVDGKGQNGTENLASKVELGSSGSPESIGCKLDGDDESKVKDVKFGKVPMDTGTGLCCSEDPLDEKPPALVSSCGNAKLSGYDDSMPHSSLSKGCDNVLVDSRDDDENFSGCAHPSNKIKSTRPITCIDDRKIKKRLASKYHKAAQESKPDKLSNSVLDGNLKPVYSSRKNYYKSQRSQMNIPFKKRKLFKCDSDTNSNGYIRSGDTYFSLKNETNQSVSYSSSGMSKDHGTSSLGHSALRSRDSHVKLRIKSFRVPELLIEIPETATIGSLKRTVMEAVTAVLGGGLRVGVILHGKKVRDDNKTLLQTGISHDNHLDALGFALEPNFSQNLPPACATSSLRIPSADMPQPFIGYPSSPAVIHQRIQGFSNTLAEHQATGLGNLVESDHDSAPSPINTSGEKKLSDSKELITVPEMGMEALAVLPGHQKSKRTEIAQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARITPQQRRGEPVPQELLDRVLTAHAYWSQQQTKQQLKHHSKPCLLL* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1496 718 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 718 IPR031105 -
Pvu5g1496 718 CDD SANT_TRF 620 670 - -
Pvu5g1496 718 Gene3D - 607 711 - -
Pvu5g1496 718 MobiDBLite consensus disorder prediction 397 417 - -
Pvu5g1496 718 SUPERFAMILY Ubiquitin-like 420 510 IPR029071 -
Pvu5g1496 718 SMART sant 618 671 IPR001005 -
Pvu5g1496 718 SUPERFAMILY Homeodomain-like 620 701 IPR009057 -
Pvu5g1496 718 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 614 673 IPR017930 -
Pvu5g1496 718 PANTHER TELOMERE REPEAT-BINDING PROTEIN 2-RELATED 1 718 - -
Pvu5g1496 718 ProSiteProfiles Myb-like domain profile. 614 669 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1496 Pvu-Chr5 37338890 37344782 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1496 - - gmx:100780881 1208.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1496 5 37338890 37344782 Pvu5g1496 5 37338890 37344782 ECH
Pvu5g1496 5 37338890 37344782 Pvu1g2405 1 49362238 49367908 ECH
Pvu8g1058 8 11540862 11543687 Pvu5g1496 5 37338890 37344782 ECH
Pvu5g1496 5 37338890 37344782 Pvu11g0651 11 5490553 5495798 PCT