Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2405 ATGGTGTTGAAGAAGAGGATAGATTATGGATTTAATGGCTTTCGAGTTCCTATTATACCTAAAGCTCCTAGATCTGTAAGGAGGAGGGGTCCTTTCAACAAAGCAACTGAGGATGGTCGAGTTTGTGCTATTGAACTACTGGCATCTTTAGCTGGTCAATTGCTGCAGGAGAGTGAAAGTTCTGCTTCCAGCAACGCATCTGAAGGAAATCGTCAACCAGCCTTTAGCCAAGGTGTCATTGAGCAAGACAGACAAGGTGAAGTTAAACCATTAAAAAAGGAGGAAATTCACCAGGGAAGCTGTGCTGAGAGTACTTTTAAGACTGAGGTAGGGTCACAAAACAGTAGCCAGAAACCTCTTCCACATGCCAAGACTGATTTTTCACAAGGACATGTTTCAGTTAATAATGATTCTGACATTTGGGAGAAAGTTCAAGCTGATGTGAAGTCTGAAATTTTCAAATGGGATAATAAATTTGGGAATTATTCTAATAGATTAGTAGAACCATCTGAAAAGTTTAGGGAGTCTAGTGATGGTAAGATGAAGATTGGATTTAAACAGGAAAAGAAAGCTGGCAGTTCATGCTTTAGGGGATCAAATTTGGCTGATAAATGTAGTTTGAAAGACCACATAGAATTGTATGTATCTCCTACACTAATTAACTCAAAAAGTAATATTAAATCTCCATTTCATAGGAAATCTTCTCCCAGTGCTTCCTTTTCCAGGCATGGGAATGTTTTTAAATTAGGTTCTAGAGATGATGACGAAAACTTTTTAAGGTGCAAAAGAGTTTGCACAAAGTCAAAGGCTTTTAGGTCTCCAAGGCGCATTGCACACAGAAGAATCAGGAATTTGATGTCTTCTAAATACTGGAAGACAGCTCCAAAGCTGAAAGACTGTGAACTTTCTAGATCTGATTTAGGAGTACCTCATTATCATAAGAGGAAGACTTGCTATGGTTTTGAAAGATCCCAGCACAACACTATTATTAAGAAGAGGAAAATCGTTGATCGGGTTTCAGGAGTAACTTCTGATGGAGGATTCAGCAGTGAGAGTGTGTCCAATTCACCTCAGAAAGGGACGGATGGAGACAAGCCTAGCTCATCTGCAAAACTGCATCTAGCTAAGGCTAAGGATTCCCATGTAAAGTTTAGCATTAAGTCGATAAGGATACCAGAGCTTTATATTGAGGTTCCTGAAACTGCAACTGTTGCTTCGCTAAAGAGGACAATCATGGAGGCGGTGATGGCTATACTTGGAGGGGGCGCGCATGTTGGTGTTCTTCATCATGGGAAAAAAGTTAGAGATGACAGTAGGACACTTGTGCAGACTGGTATATCTTGCAACGAAAATTTGGATACCCTGAGTTTCATGTTGGAGCCCGTTTCTCTTCAAGCTTCTCCAACCGTTTGTGTTGGTGATCCTTCTTCTCAATGTGATACATCCCAGCTCACCAGGCCCATAGAAACTCCTGCCTTAGATTCAGGGATTACTGATACCTTGCATGACTCACCCTTGGTGACATATCCGGGCAACCTAATTGAAAGTAACCATGATTCTACTTATTCACTCGCCGCCACTACAATTGACAAAATAACACCTGATTCCAGAGCGCTGGTTCCTGTTCCAGCTAGCACAGAAGCATTAGCTGTGGTTCCTGTGAGTCAGAAAATCAAGCGCTCTGAGTTTGTACAGCGTCGAACCAGGAGACCATTCTCTGTGTCTGAGGTAGAAGCACTTGTTCACGCAGTTGAGGAACTTGGAACTGGGAGGTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTATGTAGACTTAAAGGATAAATGGAAAACATTGGTGCACACTGCAACCATCTCCCCTCAACAAAGGAGAGGAGAGCCAGTGCCTCAGGAGCTCTTGGACAGAGTTTTGGCTGCTCATGCTTTCTGGTCTCAGCACCAAGCCAAGCAGCATGGAAAGCATCAAGCTGGATCTGGAACCTTGAAGATTACAGAAGCCTCAGCTGAAGGACCGTGTGTTTGTTGA 2043 0.4258 MVLKKRIDYGFNGFRVPIIPKAPRSVRRRGPFNKATEDGRVCAIELLASLAGQLLQESESSASSNASEGNRQPAFSQGVIEQDRQGEVKPLKKEEIHQGSCAESTFKTEVGSQNSSQKPLPHAKTDFSQGHVSVNNDSDIWEKVQADVKSEIFKWDNKFGNYSNRLVEPSEKFRESSDGKMKIGFKQEKKAGSSCFRGSNLADKCSLKDHIELYVSPTLINSKSNIKSPFHRKSSPSASFSRHGNVFKLGSRDDDENFLRCKRVCTKSKAFRSPRRIAHRRIRNLMSSKYWKTAPKLKDCELSRSDLGVPHYHKRKTCYGFERSQHNTIIKKRKIVDRVSGVTSDGGFSSESVSNSPQKGTDGDKPSSSAKLHLAKAKDSHVKFSIKSIRIPELYIEVPETATVASLKRTIMEAVMAILGGGAHVGVLHHGKKVRDDSRTLVQTGISCNENLDTLSFMLEPVSLQASPTVCVGDPSSQCDTSQLTRPIETPALDSGITDTLHDSPLVTYPGNLIESNHDSTYSLAATTIDKITPDSRALVPVPASTEALAVVPVSQKIKRSEFVQRRTRRPFSVSEVEALVHAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTATISPQQRRGEPVPQELLDRVLAAHAFWSQHQAKQHGKHQAGSGTLKITEASAEGPCVC* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2405 680 MobiDBLite consensus disorder prediction 343 365 - -
Pvu1g2405 680 MobiDBLite consensus disorder prediction 341 372 - -
Pvu1g2405 680 SUPERFAMILY Ubiquitin-like 378 457 IPR029071 -
Pvu1g2405 680 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 672 IPR031105 -
Pvu1g2405 680 SMART sant 568 621 IPR001005 -
Pvu1g2405 680 PANTHER TELOMERE-BINDING PROTEIN, PUTATIVE-RELATED 1 672 - -
Pvu1g2405 680 MobiDBLite consensus disorder prediction 85 100 - -
Pvu1g2405 680 Gene3D - 557 661 - -
Pvu1g2405 680 ProSiteProfiles Myb-like domain profile. 564 619 IPR001005 -
Pvu1g2405 680 MobiDBLite consensus disorder prediction 58 79 - -
Pvu1g2405 680 MobiDBLite consensus disorder prediction 101 131 - -
Pvu1g2405 680 SUPERFAMILY Homeodomain-like 570 651 IPR009057 -
Pvu1g2405 680 CDD SANT_TRF 570 620 - -
Pvu1g2405 680 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 565 623 IPR017930 -
Pvu1g2405 680 MobiDBLite consensus disorder prediction 58 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2405 Pvu-Chr1 49362238 49367908 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2405 - - gmx:100795471 1125.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1058 8 11540862 11543687 Pvu1g2405 1 49362238 49367908 ECH
Pvu5g1496 5 37338890 37344782 Pvu1g2405 1 49362238 49367908 ECH
Pvu1g2405 1 49362238 49367908 Pvu1g2405 1 49362238 49367908 ECH