Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1429 ATGAGTGACGAAGGAGAAAGGACTTGTCCTCTCTGTGCAGAAGATATGGATTTGACAGATCAGCAGTTGAAACCATGCAAATGTGGTTATGAGATATGTGTCTGGTGTTGGCATCACATACTGGAAATGGCTGAGAAGGACGACACAGAGGGACGATGCCCCGCATGTCGTTCTCCATATGACAAGGAAAAGATTGTTGGGATGGCTTCAAACTGTGAGAGGTTGGTGGCTGAAGTTCACATGGAAAAAAAGATGAAGAACCAGAAAGCAAAATCTAAATCATCTGAAGCACGGAAGCAGCTCAGTAGTGTGCGAGTGATTCAGCGGAACCTTGTTTACATAGTGGGCTTGCCTCTCAATCTGGCTGATGAAGATCTTCTCCAGCAGCGAGAATATTTTGGTCAGTATGGGAAGGTCTTAAAAGTCTCGATGTCTCGGACTGCTGCTGGTGTTGTTCAGCAGTTTCCAAACAATACATGTAGTGTATATATTACTTATTCAAAGGAAGAAGAAGCAATTCGGTGCATTCAAAATGTACATGGATTTGTTTTGGAGGGCAGACCATTAAGGGCTTGCTTTGGAACCACTAAATATTGCCATGCGTGGCTCAGAAACATGCCTTGCAGCAATCCGGATTGTCTATATCTGCATGAGATTGGCTCTCAAGAAGATAGTTTCACTAAAGATGAAATAATATCAGCATACACTAGTCGTGTTCAACAAATTACGGGTGCTGCAAGCAACCTGCAACGGCGAACTGGTGATGTATTGCCTCCTCCATTGGATGATTGCACAGATACTTCCTTGGGGAAACCAATTGTGAACAATGCATCAAGTACCGCTGTTAGCATTGTTAAAGGTTCACCTCCTAATGGGAGTTATGGGAGACCTATAGCTCTTTCTGCTGCTGCTTGGGGTACACGGGCTACGAATTGTCAACCAGCTGCTGGTGGTTTATTATGTGCAAATGGATTGTCCAAGACTAAACCTGATACAATCAACAACACACTACCCTTTTTGTCTGCTGTAGCAGGCACAATTCAGGCTTCATTAAATAGTGATGTGACAAAGAGACCACTGTCGGGTGATGGGAGTCATAGTATGGCTGCTGGGGTAAAAGATGAATTATTGAAACCTGTTAAACAATATAGAAGCATTGATAACATTTCTAGACCTGATGAAAGAACTTTGGCTTCTGATGTTTCACCTGTGAAATTGAGCAACCAGTTGTCTTCTCTACCATTGCTCAGAGATGGTGATAAAGGCAGTTGTACTGCCATGAATGCACCAAATTCTATTGACATCACTCAACAGTCATGCAACTTTGGTCCTGAGGAAGCAATTATTTCTACCAGTGAAGAGATTGAGAACTTGTCCTGTGATCTGTCATCTGTTTACATTGATGGAAATTCCCCAAATGAACAATACAGCCTAACCAAACCTATCAGCTCATCTGATAACATGTTGGGTAAATCTATGCAGTCTCAAGAATCACAGTATAATACTGACAAATTTAGGGATGTAATGATTACAAATGCAGAAAGTAAATCTGCTGCATTAGATAATGAGGTTTGTAATTTAAAAGAACAGTTTGATTTGTCATTGGTTTCTCAATCTCAAGTAGTATCGGCTAATACTGAAATGGAAGATGATGTAACAACGTTTGATAATCAAAGACTTAAGGATCCAGAAGTTGTTTGTTCATATTTGCCAAAGTCAGCCAGTTTCCGTCATGTCCCAAATCTTTCTCATCCTCATCTCCTGCAGCATGGTGAACCGTTCAATGTTGTAAATGCTGGTTCTTTAGACGCCAATGATAAAGTTGGGGATAACTCCCTATTACATGCAAATAACATATTACGCAACGGATATTCTGATAAATCAATGAGCTCTAGTTCTTATGGCTTCCTCCATGATGAAAGAAATGAACAACATATTGGAAGTGTAGTTAGTGAAATGGCTAGTATTGGAAGTGATGCGGTTATGGACAAGGGTGAGAGTAGTATAATTTCAAATATTTTGTCCATGGAGTTTGATACCTGGGATGACTCGGTAACATCACCTCGGAGTTTGGCCAAGTTGTTGGGTGACAACGATGACAAGCAGAATGACTCACTAAAAAAATGTAGTTCTTGGAAAATTCAGAGTAACAATCAGTCCAGATTTTCTTTTGCAAGACAGGAAGAATCCAAAATCCAAGCCAATGTACATCCATCTTCTGGTGCCATCCAACAATTTCCAAACAATGGCTCGCTCATACATGATTTTGTGGAAAGAGACTTTTCTTCAGACAAGCTGGGTATCACAAATGGTTTCCACTCCAATAACCTCGAGGAATCTGGAAATCTTGGCAGTGGTCAATTTTTTCCTTCAAACAATAAGCTTTCTGCTGTTTCAAGAGCACAAATTTCAGCACCACCAGGATTTTCTGTACCAAATAGGGCACCACCTCCTGGTTTCTCCTCTCATGAGAGAATGGGGCACGCTTTTGACTCTCTTTCTGGGAATTCATTGCTTGACCCTTCTTTCTTACTGAGAAGTTCATATCAAACACCCTCAACTGGAAATATTGGTGGTCAAGGAGACATTGAATTTATGGATCCAGCTATTTTGGCAGTTGGTAAAGGGAGAATTCAAGGTGCACGAAATAGCACATTGCTGGACATGCGGTCTAATTACCCTGAACAGTTAAATTACTTTGAAAATGAGGCTAGAGTTCAATTATTAATGCAAAGATCTCTCTCACCACAGCAAAACCTTCGATTTTCTGATATTGGGAATTCCTTTTCTCAGTTTGGTGATTCCTATGGTATCTCTTCTAGGTTAAATCAATCACAAGTCAATAATCTGGCTTCATTTCCTCAGTTGTCTCATCAGCAGTCTAGAAATGCAGTCTTGTCAAATGGTCAGTTGGATGGGTGGAATGAAGTGCCGAGTGGAAATAGTTTGGGTGTGGCAGAGCTTTTGAGAAATGAAAGACTTGGATTTAACAAGTTTTATAGAGGATATGATGATCCAAAATATCGGATGCCTAATTCTAGGGATCTGTACAACAGAACATTTGGGATTTGA 3072 0.4062 MSDEGERTCPLCAEDMDLTDQQLKPCKCGYEICVWCWHHILEMAEKDDTEGRCPACRSPYDKEKIVGMASNCERLVAEVHMEKKMKNQKAKSKSSEARKQLSSVRVIQRNLVYIVGLPLNLADEDLLQQREYFGQYGKVLKVSMSRTAAGVVQQFPNNTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHEIGSQEDSFTKDEIISAYTSRVQQITGAASNLQRRTGDVLPPPLDDCTDTSLGKPIVNNASSTAVSIVKGSPPNGSYGRPIALSAAAWGTRATNCQPAAGGLLCANGLSKTKPDTINNTLPFLSAVAGTIQASLNSDVTKRPLSGDGSHSMAAGVKDELLKPVKQYRSIDNISRPDERTLASDVSPVKLSNQLSSLPLLRDGDKGSCTAMNAPNSIDITQQSCNFGPEEAIISTSEEIENLSCDLSSVYIDGNSPNEQYSLTKPISSSDNMLGKSMQSQESQYNTDKFRDVMITNAESKSAALDNEVCNLKEQFDLSLVSQSQVVSANTEMEDDVTTFDNQRLKDPEVVCSYLPKSASFRHVPNLSHPHLLQHGEPFNVVNAGSLDANDKVGDNSLLHANNILRNGYSDKSMSSSSYGFLHDERNEQHIGSVVSEMASIGSDAVMDKGESSIISNILSMEFDTWDDSVTSPRSLAKLLGDNDDKQNDSLKKCSSWKIQSNNQSRFSFARQEESKIQANVHPSSGAIQQFPNNGSLIHDFVERDFSSDKLGITNGFHSNNLEESGNLGSGQFFPSNNKLSAVSRAQISAPPGFSVPNRAPPPGFSSHERMGHAFDSLSGNSLLDPSFLLRSSYQTPSTGNIGGQGDIEFMDPAILAVGKGRIQGARNSTLLDMRSNYPEQLNYFENEARVQLLMQRSLSPQQNLRFSDIGNSFSQFGDSYGISSRLNQSQVNNLASFPQLSHQQSRNAVLSNGQLDGWNEVPSGNSLGVAELLRNERLGFNKFYRGYDDPKYRMPNSRDLYNRTFGI* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1429 1023 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 1023 IPR039780 GO:0004842|GO:0030014
Pvu5g1429 1023 SUPERFAMILY RING/U-box 3 66 - -
Pvu5g1429 1023 CDD RRM_CNOT4 105 204 IPR034261 -
Pvu5g1429 1023 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Pvu5g1429 1023 SMART rrm1_1 111 192 IPR000504 GO:0003723
Pvu5g1429 1023 CDD mRING-HC-C4C4_CNOT4 9 58 IPR039515 -
Pvu5g1429 1023 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
Pvu5g1429 1023 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Pvu5g1429 1023 Gene3D - 111 192 IPR012677 -
Pvu5g1429 1023 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 1023 - -
Pvu5g1429 1023 SMART rrm2_1 111 192 IPR003954 GO:0003676
Pvu5g1429 1023 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Pvu5g1429 1023 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Pvu5g1429 1023 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1429 Pvu-Chr5 36691020 36703078 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1429 K10643 - gmx:100796804 1664.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1429 5 36691020 36703078 Pvu5g1429 5 36691020 36703078 ECH
Pvu5g1429 5 36691020 36703078 Pvu11g0731 11 6356061 6357870 PCT
Pvu11g0730 11 6348655 6354885 Pvu5g1429 5 36691020 36703078 PCT