Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0730 TTGGTGAATGAAGTTAATATGGAGAAAAAGATGAAGACTCAGAAGTCGAAGTCTAAATCATCTGATGGGCGCAAGCAGCTCAGCAGTGTGCGAGTGATTCAGAGGAACCTTGTTTACATAGTTGGGTTGCCTCTGAATCTTGCGGATGAAGATCTTCTTCAGCGGCGAGAGTATTTTGGTCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCTAGAACAGCAGCTGGTGTCATCCAACAGTTTCCAAATGATACATGCAGTGTATATATAACTTATGCAAAGGAAGAGGAAGCAATTCGTTGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGAAGTGTGCCTTGCAGCAATCCGGATTGTCTATATTTGCATGAGATTGGCTCTCAAGAAGATAGCTTTACTAAAGATGAAATAATTTCAGCATACACCAGAAGTCGAGTTCAACAGATCACTGGTGCAACTAACAATATGCAACGGCGGTTAGGGAGTGTATTACCTCCTCCACTGGATGACAATATGAACACTACTTCTCCAAAGCCTATTGTGAAAAATCCTTCAAATAACTCTGTTAACACTGTTAGAGGTTCACCTCCAAATGGAATCTATGAGAGACATATCCCCCTTCCTGCTAGTGCTGCATGGGGTACTCAGGCCACAAATTGTCAGCCCCTAGCTGGAGGTCTATCTTATCCAAATGGGCCATCCAAGCCCAAACCTGATACAGGCAGCAGCTCGCTAGCATTTTTTGCAGCTGTTACAGGCTCAATTCAGGCTTCTGATGTTACAAAGAGACCACCATCGAGTGATGGCAGTCATAGTATGACAACTAGAGTGAAAAATGAATTGTTGAAACCTGTTAAACAATACAACAATAGTGCGGACGGCCTGGTTAGTGCAGGAGAAAAATCTCCATCTTCTGACGTGTCTCCTGTTCCTGTGAATTTGAACAGCCAGTTATCTTCTCTACCATTGTCTCGAGATAGTGATGGCAATTGTACCACAGCAAATACAATAAATTCTACCAACATGACTGGACAGTCTTGTAACTCTGGCCCTGAGGAAGCAATGCCTTCTACCAATGAAGAGATTCCAAATTTGTCCATTGAGTTGTCCTCAATTAACATTGATGGAAATGCTGAACATTGCAGTATAACCAAACCTAATAGCCCGCCTACTGATTATGTCTTGATTAAATCTCCTGAAATTCAAGGATCACAATATAATGACAGATTTAGGGATGTAATAACTACAAATGTGGCTGGTATAGCTACACCAGATAATGAGGTTTGTAATTCTAGGGAACAGTGTGATTGGAAATTGGATTCTCAATCTCTAGTAGTATCAGATGCTGTGGAATTTGATGATGATATAACATCTTTTGATAATCAAAGACTAAAGGATCCAGAAGTTGTTTGTCGTTCTTATTTGCCAAAGTCAACTGGTTTCCTTCATGTCTCAAACCTTTCTAGCCCTTGTCTTCTGCAGCATGGTGAAGGTTGTACTTCCGTGAATGCAGGTTCTGTATCTGTTGATGAATCTATATTACATGCATCTAATATACTATGCAATGACCACCCGGAGAAATTGGTCAGCAGCAGCTCGTATGGTCTGCTTAATGATGAAAGAAATGGACATAGCATTCAAAGATTAGTTGAAGCAGTAAATGCTGGACATGATGTTACTATGGATAAGGGTGAAAGTAGTATAATTTCTAATATTTTGTCCATGGATTTTGATGCCTGGGATGACTCACTAACATCACCACATAATTTAGCTAAGTTGTTGGGTGACAATACTGATAACCAGTCTGGTCCTTTAAACATATCTAGTTCTTGGAAAGTTCACAGTAACAATCAATCAAGATTCTCTTTTGCAAGGCAGGAGGAATCCAAAATCCAAATGTTTGATGCACATACATCTTATGGTGTAAACCATCAACGGTCAAATAATAAAGTATTCCAGAATTTTTCAGAAAGAGACTTGTATATGGATAAGTCGGGCATAGCGAATGGATTTCGTACTAGTAACTTTGAAGAAGCTGAAAATATGGCTAGTGGTCATTTCATTTCATCTAACAAGCTTTCGGCCATTTCAAGGGCACAAGTTTCAGCCCCACCGGGATTTTCCATTCCAAGCAGGCCACCACCACCTGGTTTTTCGTCCAATGAGAGAGTGGAACAGGGTTTTGACTCCATTTCTGGGAATTCTCTACTTGACCATTCTTCCCTTTTGAGAAATTCATATCAGTCACCTTCAGCTGGAAACCTTGGTGGTGCTGGGGATATTGAATACATGGACCCTGCTATTTTGGCAGTTGGCAAAGGGAGACTTCAAGGTGCACTGAACAGCCCGGCACTGGACATTCGATCCAATTTTATGCCGCAGTTAAATTACTTTGAAAATGATGCTAGACTTCAATTATTGATGCAAAGATCTCTGTCACCACAGCAAAACCATAGATTTTCTGAAATTGGGAATACTTTTTCTCAACTTGGTGATTCTTATGCTGTTTCTTCAAGGTTAGATCAGTCACAAGTCAGTAATCTGGGTCCATTCCAACAGCTGTCTATGCAGCAGTCTGCAAATGCAGTCTTGTCAAATGGGCAATGGGATGGATGGAATGAGGTGCAGAGTGGAAATGGTTTGGGTGTGGCCGAGCTTTTGAGAAATGAAAGACTTGGGTTCAATAAATTTTATTCAGGATATGATGATTCAAAATTTCGGATGCCAAATTCTGGGGATCTCTACAACAGAACATTTGGGATGTGA 2826 0.4062 LVNEVNMEKKMKTQKSKSKSSDGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYAKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRSVPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSRVQQITGATNNMQRRLGSVLPPPLDDNMNTTSPKPIVKNPSNNSVNTVRGSPPNGIYERHIPLPASAAWGTQATNCQPLAGGLSYPNGPSKPKPDTGSSSLAFFAAVTGSIQASDVTKRPPSSDGSHSMTTRVKNELLKPVKQYNNSADGLVSAGEKSPSSDVSPVPVNLNSQLSSLPLSRDSDGNCTTANTINSTNMTGQSCNSGPEEAMPSTNEEIPNLSIELSSINIDGNAEHCSITKPNSPPTDYVLIKSPEIQGSQYNDRFRDVITTNVAGIATPDNEVCNSREQCDWKLDSQSLVVSDAVEFDDDITSFDNQRLKDPEVVCRSYLPKSTGFLHVSNLSSPCLLQHGEGCTSVNAGSVSVDESILHASNILCNDHPEKLVSSSSYGLLNDERNGHSIQRLVEAVNAGHDVTMDKGESSIISNILSMDFDAWDDSLTSPHNLAKLLGDNTDNQSGPLNISSSWKVHSNNQSRFSFARQEESKIQMFDAHTSYGVNHQRSNNKVFQNFSERDLYMDKSGIANGFRTSNFEEAENMASGHFISSNKLSAISRAQVSAPPGFSIPSRPPPPGFSSNERVEQGFDSISGNSLLDHSSLLRNSYQSPSAGNLGGAGDIEYMDPAILAVGKGRLQGALNSPALDIRSNFMPQLNYFENDARLQLLMQRSLSPQQNHRFSEIGNTFSQLGDSYAVSSRLDQSQVSNLGPFQQLSMQQSANAVLSNGQWDGWNEVQSGNGLGVAELLRNERLGFNKFYSGYDDSKFRMPNSGDLYNRTFGM* 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0730 941 MobiDBLite consensus disorder prediction 8 24 - -
Pvu11g0730 941 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 941 IPR039780 GO:0004842|GO:0030014
Pvu11g0730 941 MobiDBLite consensus disorder prediction 356 378 - -
Pvu11g0730 941 MobiDBLite consensus disorder prediction 724 745 - -
Pvu11g0730 941 MobiDBLite consensus disorder prediction 188 210 - -
Pvu11g0730 941 MobiDBLite consensus disorder prediction 185 210 - -
Pvu11g0730 941 SMART rrm1_1 37 118 IPR000504 GO:0003723
Pvu11g0730 941 MobiDBLite consensus disorder prediction 276 295 - -
Pvu11g0730 941 CDD RRM_CNOT4 31 130 IPR034261 -
Pvu11g0730 941 Gene3D - 37 118 IPR012677 -
Pvu11g0730 941 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 941 - -
Pvu11g0730 941 MobiDBLite consensus disorder prediction 244 263 - -
Pvu11g0730 941 SUPERFAMILY RNA-binding domain, RBD 30 116 IPR035979 GO:0003676
Pvu11g0730 941 MobiDBLite consensus disorder prediction 1 27 - -
Pvu11g0730 941 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 116 IPR000504 GO:0003723
Pvu11g0730 941 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 122 IPR000504 GO:0003723
Pvu11g0730 941 SMART rrm2_1 37 118 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0730 Pvu-Chr11 6348655 6354885 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0730 K10643 - gmx:100801880 1616.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0730 11 6348655 6354885 Pvu5g1429 5 36691020 36703078 PCT