Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1353 ATGGCATCATCATCGTCAAGGTTCCTCAACACATCTCTGTCTTTTATGCTCTTCTTCCTCATCTCCAATAACATTCCACCTTCTTTCTCCTCTCCAACTCACCCCACAACCACTGAACTTAGTTTTTCTTCAACGGCAGAAAAACTCATAAGAGGGTTCAACCTGTTCCCTAAAGACCCTATTAATACACTCGAGAGTGACTCTCTTCTTGTGGCAGGAAACATTGTGGAGAAGAAGTTAACTTTTCCTAGCCTTGTTGCTCCAGGGTCTTCTGTTGAAGAACTTGGTCACCATGCAGGCTATTATAGTCTTCCCCGTTCCAAAGCTGCAAGGATGTTCTACTTTTTCTTTGAATCTCGAAGCAGAAAGGATGATCCCGTTGTCATATGGTTGACTGGAGGACCAGGATGCAGCAGTGAACTAGCTTTGTTTTACGAAAATGGTCCTTTTCAGCTTACCAAGAACTTGTCCCTTGTGTGGAATGACTATGGTTGGGACAAGGCATCAAATATTATATTTGTTGATCAACCCACTGGTACGGGGTTCAGCTATACTTCTGATGAGAGTGACATTCGCCATGATGAAGAAGGCGTTAGCAATGATTTGTATGACTTCTTGCAGGCCTTTTTCAAGGAGCACCCTCAATTCACTAAGAATGACTTTTATATTACTGGAGAGTCATATGCTGGACACTACATTCCAGCTCTTGCATCCAGGGTTCACCAAGGAAACAAAGCAAAAGAAGGAATTCATATAAATCTAAAGGGTTTTGCTATTGGTAATGGCTTAACCAATCCTGAAATTCAGTACCAGGCGTATACAGACTATGCATTAGACAGAGGACTGATTGAAAAGGCTGATTATAATAGCATCAACAAGTTGCTCCCATCATGCAAGCAGGCCATAGAAGCTTGCGGCACTGAAGGTGGAGAAACCTGTGAAACTTCATTATATGTTTGCAATAGGATATTCAATCGGATAATGAACATTGCTGGAGATGTTAATTACTATGACATTAGAAAGAAATGTGTGGGAGATCTGTGCTATGACTTCTCTGAGATGGAGGAATTCTTAAACAAGAAGACAGTGAGAGATGCTTTAGGTGTTGGGGAGTTGGACTTCGTTTCATGCAGTAGCACAGTGTATAGTGCTATGATGCAAGACTGGATGAAAAATCTAGAAGCGGGTATTCCCGCACTCCTCGAGGATGGAATCAAGGTGCTTGTGTATGCTGGAGAAGAAGATCTCATATGCAATTGGCTTGGGAATTCAAGGTGGGTTCAAGCAATGGAGTGGTCCGGTCAAAAAGAATTTGGGGCGTCTGGTACAGTCCCATTTTTGGTGGATGGTGCAGAAGCAGGCTTGCTGAAAAGCCATGGACCTCTCGCTTTCCTGAAGGTATACGAGGCTGGTCACATGGTGCCTATGGATCAACCAAAGGCTGCACTTACAATGCTAAGAAGCTGGATGCAAGGGAAACTGACAATGACAAAGAATGGGGATAATGTCTCTCCAAAATGA 1521 0.4306 MASSSSRFLNTSLSFMLFFLISNNIPPSFSSPTHPTTTELSFSSTAEKLIRGFNLFPKDPINTLESDSLLVAGNIVEKKLTFPSLVAPGSSVEELGHHAGYYSLPRSKAARMFYFFFESRSRKDDPVVIWLTGGPGCSSELALFYENGPFQLTKNLSLVWNDYGWDKASNIIFVDQPTGTGFSYTSDESDIRHDEEGVSNDLYDFLQAFFKEHPQFTKNDFYITGESYAGHYIPALASRVHQGNKAKEGIHINLKGFAIGNGLTNPEIQYQAYTDYALDRGLIEKADYNSINKLLPSCKQAIEACGTEGGETCETSLYVCNRIFNRIMNIAGDVNYYDIRKKCVGDLCYDFSEMEEFLNKKTVRDALGVGELDFVSCSSTVYSAMMQDWMKNLEAGIPALLEDGIKVLVYAGEEDLICNWLGNSRWVQAMEWSGQKEFGASGTVPFLVDGAEAGLLKSHGPLAFLKVYEAGHMVPMDQPKAALTMLRSWMQGKLTMTKNGDNVSPK* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1353 506 ProSitePatterns Serine carboxypeptidases, serine active site. 223 230 IPR018202 GO:0004185
Pvu5g1353 506 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 48-RELATED 38 494 - -
Pvu5g1353 506 SUPERFAMILY alpha/beta-Hydrolases 97 493 IPR029058 -
Pvu5g1353 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 173 IPR001563 GO:0004185|GO:0006508
Pvu5g1353 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 174 184 IPR001563 GO:0004185|GO:0006508
Pvu5g1353 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 209 234 IPR001563 GO:0004185|GO:0006508
Pvu5g1353 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 462 475 IPR001563 GO:0004185|GO:0006508
Pvu5g1353 506 Gene3D alpha/beta hydrolase 76 504 IPR029058 -
Pvu5g1353 506 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 38 494 IPR001563 GO:0004185|GO:0006508
Pvu5g1353 506 Pfam Serine carboxypeptidase 94 492 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1353 Pvu-Chr5 35645751 35649690 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1353 K16298 - gmx:100785987 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1353 5 35645751 35649690 Pvu5g1353 5 35645751 35649690 ECH
Pvu5g1353 5 35645751 35649690 Pvu11g0870 11 8129070 8131920 PCT
Pvu11g0872 11 8142889 8145752 Pvu5g1353 5 35645751 35649690 PCT