Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1190 ATGGCTTCCGCAGCCTCTTCGCTCCTCCGAGCTTCTCGCTCCAAGCTTGCTTCCTCTACCTCCTCTACAGTTTCTAGAGCCTTCTCTCGTTCCATTCCTGGCCGATCATCCGGCTCCTCCTCCGCCGCGCGCTCCTTCGGCTCCGCCGTTCCGCGATGGAGCCACGGCGTCGATTGGCGCTCTCCTCTCGGCCTCCGCCATCAGATCAGAGCCGTCGCTCCCCTCATCGAACGCTTCCACCGGAGGATCGCCACTAGTGCTCTTGATAATCCTTTCAAGGGAAATCTAACGAGTCTCCCTAAGCCTGGTGGTGGCGAGTTTGGAAAGTTCTACAGCCTCCCGTCGCTCAATGATCCGAGAATTGATAGGTTGCCATACTCTATCAGAATTCTGCTTGAATCTGCCATCCGTAATTGTGACAACTTCCAAGTTACTAAGGAAGATGTTGAAAAGATTATTGACTGGGAAAACTCTTCTGTGAAGCAAGTTGAGATTCCTTTCAAGCCTGCTCGTGTTTTGCTGCAGGATTTTACTGGAGTCCCTGCTGTTGTTGACCTGGCTTGCATGCGTGATGCTATGAATAAGCTTGGCAGTGATTCTAATAAGATCAATCCTCTGGTTCCTGTTGATCTTGTCATTGATCATTCAGTTCAAGTTGATGTAGCAAGGTCAGAGAATGCAGTGCAGGCCAATATGGAGCTCGAGTTCCAGAGAAACCAGGAGAGATTTGCTTTTCTTAAATGGGGGTCTAATGCTTTCCGTAACATGCTTGTTGTCCCTCCCGGTTCTGGTATAGTACATCAAGTCAATCTTGAATATCTTGGACGTGTTGTTTTCAACAATGAAGGCTTGCTCTATCCGGACAGTGTTGTTGGGACTGATTCACATACAACAATGATTGATGGGCTTGGAGTTGCTGGATGGGGTGTTGGGGGTATAGAAGCAGAGGCAGCAATGCTTGGCCAGCCTATGAGCATGGTGTTACCTGGTGTTGTTGGGTTCAAGTTATCTGGAAAGTTGCGCAATGGAGTTACAGCAACTGACTTGGTTCTAACTGTGACACAAATTCTTAGGAAACATGGTGTTGTGGGGAAATTTGTTGAATTTTATGGTGATGGTATGGGTGAGTTATCATTAGCCGATAGGGCCACAATTGCCAATATGTCTCCTGAATATGGTGCAACCATGGGCTTCTTCCCTGTAGACCACGTAACATTACAATACCTCAAGTTAACTGGAAGAAGTGATGAGACTGTGGCAATGATAGAGGCCTATCTCAGGCAAAACAAATTGTTTATTGACTATAATGAGCCTCAACCGGACAGAGTTTATTCATCCTATCTCGAATTGAACCTTGACGAAGTCGAACCATGCATCTCGGGACCCAAGAGACCTCATGATCGGGTGCCTTTGAAAGAAATGAAGGCTGATTGGCATTCTTGTCTAGACAACAAAGTGGGATTTAAGGGATTTGCTATACCAAAAGACGTGCAAGGAAAAGTTGCAAAATTTGATTTTCATGGGCAGCCAGCGGAGATCAAGCATGGCAGTGTTGTGATTGCTGCAATCACAAGCTGTACAAATACATCAAACCCAAGTGTTATGCTTGGGGCTGGTCTTGTAGCAAAGAAGGCTCATGAGCTTGGTTTGAAGGTTAAGCCGTGGGTAAAAACAAGTCTTGCTCCTGGATCTGGAGTTGTTACAAAATATCTACTAAAGAGTGGCCTGCAAAAGTATCTAAATGAGCAGGGTTTCAATATTGTTGGATTTGGCTGTACCACATGTATTGGCAATTCTGGGGAACTGGACCAGTCAGTTGCTTCTGCCATATCTGAAAACGATATAGTGGCTTCTGCTGTGTTGTCTGGGAACCGCAATTTTGAGGGCCGTGTGCACCCCTTGACAAGAGCTAACTACCTTGCGTCACCACCTCTAGTTGTTGCTTATGCTCTTGCTGGCACAGTTGACATTGACTTTGAAAAGGAGCCAATAGGAACAGGGAAGGATGGAAAGAATATTTTCTTGAGGGATGTTTGGCCATCCACTCAAGAAATTGCAGATGCTGTTCAATCCAGTGTGTTGCCTGACATGTTCCGAAGTACATATGAAGCTATTACCAAAGGTAACACAATGTGGAACCAACTGCAAGTCCCTGCTGAGACCCTGTACTCATGGGACCCCAAGTCAACATATATTCATGAACCTCCATACTTCAAGGGCATGACCATGGATCCTCCTGGAGCTCATGGTGTGAAAGATGCCTACTGTCTGCTGAATTTTGGTGACAGCATAACAACTGATCACATTTCTCCTGCTGGAAACATTAACAAGGACAGTCCTGCTGCAAAATACCTTCTGGAGCGAGGGGTGGAACAAAAGGACTTCAATTCATATGGAAGTCGCCGTGGCAATGATGAAGTGATGGCGAGGGGAACTTTTGCAAACATTCGTCTTGTTAACAAGCTCTTGAATGGGGAGGTCGGCGCCAAGACAGTTCACATTCCCACCGGGGAGAAGCTTTATGTGTTTGATGCAGCGCAGAGATACAAGGCCGAGGGGAAGGACACCATTGTTCTGGCTGGAGCTGAGTATGGTAGTGGGAGTTCCAGAGATTGGGCCGCCAAGGGTCCCATGCTATTGGGTGTCAAAGCTGTGATAGCTAAAAGTTTTGAGAGAATTCATCGTAGTAATTTGGTAGGAATGGGTATTATTCCTCTGTGCTTTAAATCTGGTGAGGACGCTGACACATTAGGATTGACCGGCCACGAACGTTATACTATTGACCTCCCGAGTAAAATCAGCGAGATAAGGCCTGGCCAAGATGTCACCGTAACAACGGATAATGGAAAATCTTTCACCTGCACAGCTCGCTTCGACACTGAGGTGGAACTTGCTTACTTTAACCATGGGGGTATACTTCCGTATGTGATCAGGAACCTCATTAAGCAGTGA 2952 0.4661 MASAASSLLRASRSKLASSTSSTVSRAFSRSIPGRSSGSSSAARSFGSAVPRWSHGVDWRSPLGLRHQIRAVAPLIERFHRRIATSALDNPFKGNLTSLPKPGGGEFGKFYSLPSLNDPRIDRLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENSSVKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNQERFAFLKWGSNAFRNMLVVPPGSGIVHQVNLEYLGRVVFNNEGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQILRKHGVVGKFVEFYGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIEAYLRQNKLFIDYNEPQPDRVYSSYLELNLDEVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAIPKDVQGKVAKFDFHGQPAEIKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHELGLKVKPWVKTSLAPGSGVVTKYLLKSGLQKYLNEQGFNIVGFGCTTCIGNSGELDQSVASAISENDIVASAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKNIFLRDVWPSTQEIADAVQSSVLPDMFRSTYEAITKGNTMWNQLQVPAETLYSWDPKSTYIHEPPYFKGMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGNINKDSPAAKYLLERGVEQKDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGAKTVHIPTGEKLYVFDAAQRYKAEGKDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSKISEIRPGQDVTVTTDNGKSFTCTARFDTEVELAYFNHGGILPYVIRNLIKQ* 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1190 983 Pfam Aconitase family (aconitate hydratase) 150 653 IPR001030 -
Pvu5g1190 983 Pfam Aconitase C-terminal domain 782 909 IPR000573 -
Pvu5g1190 983 TIGRFAM aconitase_1: aconitate hydratase 1 108 981 IPR006249 -
Pvu5g1190 983 Gene3D Aconitase, domain 3 458 681 IPR015931 -
Pvu5g1190 983 SUPERFAMILY LeuD/IlvD-like 722 981 - -
Pvu5g1190 983 ProSitePatterns Aconitase family signature 2. 584 597 IPR018136 -
Pvu5g1190 983 Gene3D Aconitase, domain 4 746 982 IPR015928 -
Pvu5g1190 983 ProSitePatterns Aconitase family signature 1. 518 534 IPR018136 -
Pvu5g1190 983 PANTHER ACONITATE HYDRATASE 55 983 - -
Pvu5g1190 983 CDD AcnA_IRP 171 655 - -
Pvu5g1190 983 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 55 983 IPR006249 -
Pvu5g1190 983 Gene3D Aconitase, domain 3 89 457 IPR015931 -
Pvu5g1190 983 CDD AcnA_IRP_Swivel 759 929 IPR044137 -
Pvu5g1190 983 PRINTS Aconitase family signature 232 245 IPR001030 -
Pvu5g1190 983 PRINTS Aconitase family signature 256 264 IPR001030 -
Pvu5g1190 983 PRINTS Aconitase family signature 285 298 IPR001030 -
Pvu5g1190 983 PRINTS Aconitase family signature 299 314 IPR001030 -
Pvu5g1190 983 PRINTS Aconitase family signature 361 374 IPR001030 -
Pvu5g1190 983 PRINTS Aconitase family signature 375 388 IPR001030 -
Pvu5g1190 983 PRINTS Aconitase family signature 457 471 IPR001030 -
Pvu5g1190 983 PRINTS Aconitase family signature 522 533 IPR001030 -
Pvu5g1190 983 PRINTS Aconitase family signature 584 597 IPR001030 -
Pvu5g1190 983 Gene3D - 682 743 - -
Pvu5g1190 983 SUPERFAMILY Aconitase iron-sulfur domain 104 718 IPR036008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1190 Pvu-Chr5 33284369 33293363 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1190 K01681 - gmx:100810088 1843.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1190 5 33284369 33293363 Pvu5g1190 5 33284369 33293363 ECH
Pvu5g1190 5 33284369 33293363 Pvu11g1068 11 11748219 11749286 PCT
Pvu11g1067 11 11735797 11747231 Pvu5g1190 5 33284369 33293363 PCT