Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2948 ATGTCAAGCCACGGTGGTTCTTCTCGAAGGGGCAGCTCGTTGTTGAACAGCCCCTCGCAGAATAGGAAGAAATCCACTGAGTATTCGCCGCTTGACCTTACTACTCGTAAAGCGTTCCCGTCATCGCGCACCGTGGGAGAGCGAACTGTGAAATCATTGCGGCTTTCAAAGGCATTGACAGTTCCTGAAACAACAACCATCTATGAAGCTTGCCGTAGGATGGCTGCTCGCAAAGTAGATGCTCTACTGCTAACTGATTCTAATGCATTGCTCTGTGGAATCCTCACAGACAAGGATATAGCAACAAGAGTTATTGCTCGTGAGGTTAATCTCGAAGAAACAACCGTTTCCAAGGTTATGACAAGGAATCCAGTATTTGTCCTTTCTGACACTCTTGCTGTGGAAGCCCTCCAAAAGATGGTGCAAGGGAGGTTCAGACATTTACCTGTGGTGGAGAACGGAGAAGTTGTTGCCATACTTGACATAGCAAAGTGTTTGTATGATGCCATTGCCCGTATGGAAAGGGCAGCAGAGAAAGGAAAGGCAATTGCGGCTGCTGTTGAAGGTATCGAAAAACACTGGGGAACACCTACGTCTGGCACCAATTCAACGTTCTTTGAGACACTTCGCGAGCACATATTTAAGCCATCTTTGTCTACAATCATTCCTGAGAATTCAAAAGTTGTTACAGTTTCACCAACAGACTCAGTTTTGGCGACAACAAAGAAGATGCTTGAACTTCGTGTAAGCTCTGCAGTTGTGACGGTTGATGACAAACCTTGTGGTATCCTTACTTCAAATGACATCTTGATGCGGGTGATAGCGCAAAGTCTTTCTCCAGCGTTTACTCTTGTTGAGAAGGTCATGACTCCAAATCCTGAATGTGCAATAATTGATACACCAATAGTCGATGCACTTCACACTATGCATGATGGGAAATTTTTGCATCTTCCCGTTGTTGATAGAGATGGTACTGTTGTTGCTACTGTTGATGTAATTCATATAACTCACGCGGCTGTGGCGACAGCTAGTCAGGTCGGAAATAGTGCTAGCTTGAATAATGAAGCAGCCAACTCCATGATACAAAAATTTTGGGATTCAGCCATGTCCTTAGTTCCAAATGGGGAGGATGACGATAACCAGAGCGAAACTTCCTTGAAAATGATTTCTGAGGGAGGAGAAACAGGGAGATCCCTTTCATATCTCGGGAGCATGCCGAACGCATTTTCCTTCAAAGTACAAGACAGGAAGGGAAGATTGCATAGATTCACATGCGATACTCGGTGCTTGGCAGAGGTAATAACTTGCATTCTTCATAGAGTCGGTGATGAAATTGACCCCACGAACCTCCCTCAAATTTTGTACGAAGATGAAGAAAATGATAAAGTTGTACTGGCTTCGGACAGTGATCTTGCCGCAGCTGTAGACCACGCCAAGGCGGCTGGTTTAAAGGGATTGAGATTGCATTTAGACTACTCAGGAGCACGGGGTTATGGAAATGATTCATGTTCAGTAAGCTGGAAATATGGTAATTCAGAATCATGGACAACAGCATACGGCACCATTGCTGCTGGAGCTGCATTTGTTGCTGCCTTAGGCCTTTTGGCGTTTGTGAGACGAAGTCAATAA 1629 0.45 MSSHGGSSRRGSSLLNSPSQNRKKSTEYSPLDLTTRKAFPSSRTVGERTVKSLRLSKALTVPETTTIYEACRRMAARKVDALLLTDSNALLCGILTDKDIATRVIAREVNLEETTVSKVMTRNPVFVLSDTLAVEALQKMVQGRFRHLPVVENGEVVAILDIAKCLYDAIARMERAAEKGKAIAAAVEGIEKHWGTPTSGTNSTFFETLREHIFKPSLSTIIPENSKVVTVSPTDSVLATTKKMLELRVSSAVVTVDDKPCGILTSNDILMRVIAQSLSPAFTLVEKVMTPNPECAIIDTPIVDALHTMHDGKFLHLPVVDRDGTVVATVDVIHITHAAVATASQVGNSASLNNEAANSMIQKFWDSAMSLVPNGEDDDNQSETSLKMISEGGETGRSLSYLGSMPNAFSFKVQDRKGRLHRFTCDTRCLAEVITCILHRVGDEIDPTNLPQILYEDEENDKVVLASDSDLAAAVDHAKAAGLKGLRLHLDYSGARGYGNDSCSVSWKYGNSESWTTAYGTIAAGAAFVAALGLLAFVRRSQ* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2948 542 CDD CBS_pair_MUG70_1 55 171 - -
Pvu2g2948 542 SMART PB1_new 408 493 IPR000270 GO:0005515
Pvu2g2948 542 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSCBSPB4-RELATED 30 530 IPR034896 -
Pvu2g2948 542 Pfam CBS domain 56 102 IPR000644 -
Pvu2g2948 542 Pfam CBS domain 285 336 IPR000644 -
Pvu2g2948 542 Pfam CBS domain 116 160 IPR000644 -
Pvu2g2948 542 Pfam CBS domain 225 271 IPR000644 -
Pvu2g2948 542 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 30 530 - -
Pvu2g2948 542 SUPERFAMILY CBS-domain pair 226 338 IPR046342 -
Pvu2g2948 542 ProSiteProfiles CBS domain profile. 120 178 IPR000644 -
Pvu2g2948 542 ProSiteProfiles CBS domain profile. 289 346 IPR000644 -
Pvu2g2948 542 MobiDBLite consensus disorder prediction 1 33 - -
Pvu2g2948 542 SUPERFAMILY CBS-domain pair 47 163 IPR046342 -
Pvu2g2948 542 Pfam PB1 domain 409 491 IPR000270 GO:0005515
Pvu2g2948 542 CDD CBS_pair_MUG70_2 225 341 - -
Pvu2g2948 542 SMART cbs_1 292 340 IPR000644 -
Pvu2g2948 542 SMART cbs_1 123 167 IPR000644 -
Pvu2g2948 542 SMART cbs_1 57 105 IPR000644 -
Pvu2g2948 542 SMART cbs_1 227 274 IPR000644 -
Pvu2g2948 542 Gene3D - 36 185 IPR046342 -
Pvu2g2948 542 ProSiteProfiles PB1 domain profile. 406 493 IPR000270 GO:0005515
Pvu2g2948 542 Gene3D - 217 357 IPR046342 -
Pvu2g2948 542 SUPERFAMILY CAD & PB1 domains 404 490 - -
Pvu2g2948 542 ProSiteProfiles CBS domain profile. 221 280 IPR000644 -
Pvu2g2948 542 ProSiteProfiles CBS domain profile. 54 113 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2948 Pvu-Chr2 45016388 45023149 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2948 - - gmx:100783514 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2948 2 45016388 45023149 Pvu2g2948 2 45016388 45023149 ECH
Pvu2g2948 2 45016388 45023149 Pvu9g1572 9 22125620 22130047 PCT
Pvu9g1707 9 24160133 24165319 Pvu2g2948 2 45016388 45023149 PCT