Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2392 ATGCTTACTAGGCATGATCCGAGGTTTAGGTCAACAGTGACGGTGGACGGAATGAGCTACACTTCCCCCAACCTTTTCTCTCAACGAAAGCCTGCTGAGCAGGATGCAGCTAGAATTGCACTCTTAAGCCTGCAAGAACATCGTGAAGATGATGAGCCCCCTGTGGTTCATGAGAATATCACATTTTCCAAAGCTATCTTGCATGATTATGCTGGTAAACTGAATTTGGAAAAGCCTGAATACAACATTGTTCAACTAGAAGGACCACATCCTCTTCATTTTGTATCATCTGTGAGGTTCAATGGTACACACTACACTGGCACTACTGCCAAAAACAAAAAAACTGCTGAGCAGTTGGCAGCATATCATGCTATAGTGACAATGCTAGATGGTTGTACCTCAGGATTACTTTACGAGACAATGAAGGCAAAATACAGACTTCCTGGTGCAATCAAACCAATTGAACCCCTTGGAATTGGTGCAACCAATTCCATTTCAGCCGCCATGACAAGTAGGGAAAATACCTATGTTTCACTGAGTCATAAGAATAAGGAGGCTGCAGTTGTTGTAGCTGCTCATGTTCCATCTCAGGTGCCTGAAAATATGTCACCCGTTCAAACCACTGTCGCTGAGATTCCACAACTGAATCTCCTTCCAAGTCAAGAACAGTCTACTGCTACTTCTGGTTCATGGGAACTGTCTACTGGTGATGGTAGTTCAGTAATGAAATCAAAAATTGATAAGATATGA 750 0.428 MLTRHDPRFRSTVTVDGMSYTSPNLFSQRKPAEQDAARIALLSLQEHREDDEPPVVHENITFSKAILHDYAGKLNLEKPEYNIVQLEGPHPLHFVSSVRFNGTHYTGTTAKNKKTAEQLAAYHAIVTMLDGCTSGLLYETMKAKYRLPGAIKPIEPLGIGATNSISAAMTSRENTYVSLSHKNKEAAVVVAAHVPSQVPENMSPVQTTVAEIPQLNLLPSQEQSTATSGSWELSTGDGSSVMKSKIDKI* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2392 249 CDD DSRM_SF 68 125 - -
Pvu1g2392 249 MobiDBLite consensus disorder prediction 220 249 - -
Pvu1g2392 249 SUPERFAMILY dsRNA-binding domain-like 63 130 - -
Pvu1g2392 249 SUPERFAMILY dsRNA-binding domain-like 4 45 - -
Pvu1g2392 249 PANTHER RIBONUCLEASE III 4 212 IPR011907 GO:0003723|GO:0004525|GO:0006364
Pvu1g2392 249 Pfam Double-stranded RNA binding motif 64 125 IPR014720 -
Pvu1g2392 249 MobiDBLite consensus disorder prediction 220 241 - -
Pvu1g2392 249 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 46 IPR014720 -
Pvu1g2392 249 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 62 130 IPR014720 -
Pvu1g2392 249 Gene3D - 2 50 - -
Pvu1g2392 249 Gene3D - 54 131 - -
Pvu1g2392 249 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 4 4 212 - -
Pvu1g2392 249 SMART DRBM_3 63 129 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2392 Pvu-Chr1 49248451 49250874 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2392 - - pvu:PHAVU_001G231400g 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2392 1 49248451 49250874 Pvu1g2392 1 49248451 49250874 ECH
Pvu1g2392 1 49248451 49250874 Pvu8g2426 8 54864873 54868946 PCT
Pvu8g2425 8 54859670 54863276 Pvu1g2392 1 49248451 49250874 PCT