Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2425 CAACAAACAAACATTATGAGAATTTTTGTACGAACAACAGTGTTCACACTTCTCTCCTTTGCATTCCTAGACCAACTTGATGCTGGAATAGTAAGAGAAACTTCTTCTACTATTTCTCACTCATCCATGGCTTCATCTTCTTCCAAACCTTTACCTCCTCGACCATCTCCTTTTCCCCTTCCTGTTCAACTTTTTGCTCAACAACTGATGCACAAAAATCGCTTACAAGAGTTTGCTCAAAAGTGTAACATTGCACTTCCCGTGTATCAAACTAACAACGAGGGACAACAACATGCTCCAAGATTTAGGTCAAAGGTGTGGGTGGATGGAATGAGTTACATTTCCCAATCTACTTTTTCCCACAGAAAAACTGCTGAACAGGATGCTGCCAGACTGGCCATGGAGTGCCTCCCTAAAAGGACAAGAGATGAAGCACCATCTCTTGATTGTGAGATTTCTGCATTTTGCAAGTCTATCTTGAATGAATATGCTACTAAATTGAAGCTAGAAGGACCTACTTATAAGACTGTTCAGCAAGAAGGGTTGCTTCCTAGTTTTATATCTTCTTTAGTTTTCAATGGCACAAGTTACACTGGTGATGCGGCTAGAAACAAAAAGGATGCTGAACAGTTAGCTGCCAGTGCTGCTATTCTCTCAATTCTGAATAATTCTGGTTCAGGATCAATGCTTGCTGAGATGATTAAGTCAAAATCTAAACTTAATCATGCAATAAAAAGAAAGAAGGGAGTGCAAGGATGGTTTCCCCAAGTCAAGAATTTAAGATACCAAAGCAAGAACTATTCCCTTCGGCCACCAAGGGATCAAATGTGTACCTACCCCGATCTTCAGCTCCTACTTTTCATGGTGGTTCAAGTTTGA 879 0.4039 QQTNIMRIFVRTTVFTLLSFAFLDQLDAGIVRETSSTISHSSMASSSSKPLPPRPSPFPLPVQLFAQQLMHKNRLQEFAQKCNIALPVYQTNNEGQQHAPRFRSKVWVDGMSYISQSTFSHRKTAEQDAARLAMECLPKRTRDEAPSLDCEISAFCKSILNEYATKLKLEGPTYKTVQQEGLLPSFISSLVFNGTSYTGDAARNKKDAEQLAASAAILSILNNSGSGSMLAEMIKSKSKLNHAIKRKKGVQGWFPQVKNLRYQSKNYSLRPPRDQMCTYPDLQLLLFMVVQV* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2425 292 PANTHER RIBONUCLEASE III 53 248 IPR011907 GO:0003723|GO:0004525|GO:0006364
Pvu8g2425 292 Pfam Double-stranded RNA binding motif 72 135 IPR014720 -
Pvu8g2425 292 Pfam Double-stranded RNA binding motif 157 217 IPR014720 -
Pvu8g2425 292 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 4 53 248 - -
Pvu8g2425 292 SUPERFAMILY dsRNA-binding domain-like 157 235 - -
Pvu8g2425 292 Gene3D - 142 224 - -
Pvu8g2425 292 Gene3D - 56 141 - -
Pvu8g2425 292 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 155 222 IPR014720 -
Pvu8g2425 292 SMART DRBM_3 156 221 IPR014720 -
Pvu8g2425 292 SMART DRBM_3 71 138 IPR014720 -
Pvu8g2425 292 SUPERFAMILY dsRNA-binding domain-like 66 138 - -
Pvu8g2425 292 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 70 139 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2425 Pvu-Chr8 54859670 54863276 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2425 - - pvu:PHAVU_008G234400g 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2425 8 54859670 54863276 Pvu1g2392 1 49248451 49250874 PCT