Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2426 ATGGCTTCTGCCCCTTCCGACTCTGCTCCTCCCGACTCTGCTCCTCCTTCTGACTCTGCTCCTCCTTCTCTACCTGCGGTTCCTGTTCCTGTTCCCGTTGTTTCTCAGTCTCCTGGACCTTTGATGTACAAAAATCGGTTGCATGAATTTGCGACAAGGTCAGGCATTGCTATCCCTGTGTATCAAACCGTTAGCGAGGGAGAGCCACATAATCCAAAGTTTAGGTCAACTGTGTGGGTGGCTGGGATTAGTTATACTTCCCAATCCACATTTCCCCAGAAAAAAGCTGCTGAACAGGAAGCATCTAGACTTGCTCTAGAAATTACCCTTCAGAAGACCAGAGATGAAGGACCCTCTCTTGTCAGTCAGATTTCTCCATTTTGCAAGTCTATCATAAATGAATATGCTTCTAAACTGCATATTGAAGGACCTTCATACAACACTGTTCAGCAACAACAAGGAGGTGTACTTCCGGTTTTTACAACATCTTTAGTTTTCAATGGTACAAGCTACACCGGTGATCCAGCCAGAACCAAAAAGGAAGCTGAGCAGTCGGCAGCACACACTGCTATTCTTTCAATTATGGGTGATTCTAGCTCAGGAAGTAAGCTCTGTGAGATAATTAAGTCGAAGTCTTTATATTATGATGCAATCAAAGGAAAGGACATATCTCTGTTACAGGCTAATGCAGTGTTATCCACACCAAATTCAGAACATAGCTCTCTTACACTGGATCGGAAAGATGCAGTAGTTTCAGGTTCTGTTGCTGATAATAGTGAAGTTAAAGTTGATTATCCTGAGTCTTCTGAAATTCAATCTACATGTCAAACATTTCAAATTCCAAAACAAGAATCTTCTCTTCAAGCCACCCTGCCTCTGCAACCAGGTTCAGCACATTCAATTGATGATGGTGTAAGTTCAAAAAGGCGGAGAAAGAGCAAGAAGAGGGCTAATAAGAAGTCACGGTTGGAATCTCCGTTACCGATTACTACAGTTCCCATGAACCAAGCCCCTCCATGCGCAGATCCCATTAACCAAGCCCCTCCATGCACTGCAGATCCCATGAACCAAGCCCCTCCTTGTTCGGTGGCACAGTAA 1098 0.4426 MASAPSDSAPPDSAPPSDSAPPSLPAVPVPVPVVSQSPGPLMYKNRLHEFATRSGIAIPVYQTVSEGEPHNPKFRSTVWVAGISYTSQSTFPQKKAAEQEASRLALEITLQKTRDEGPSLVSQISPFCKSIINEYASKLHIEGPSYNTVQQQQGGVLPVFTTSLVFNGTSYTGDPARTKKEAEQSAAHTAILSIMGDSSSGSKLCEIIKSKSLYYDAIKGKDISLLQANAVLSTPNSEHSSLTLDRKDAVVSGSVADNSEVKVDYPESSEIQSTCQTFQIPKQESSLQATLPLQPGSAHSIDDGVSSKRRRKSKKRANKKSRLESPLPITTVPMNQAPPCADPINQAPPCTADPMNQAPPCSVAQ* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2426 365 Gene3D - 41 108 - -
Pvu8g2426 365 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 4 34 318 - -
Pvu8g2426 365 SUPERFAMILY dsRNA-binding domain-like 128 200 - -
Pvu8g2426 365 SUPERFAMILY dsRNA-binding domain-like 41 109 - -
Pvu8g2426 365 MobiDBLite consensus disorder prediction 9 31 - -
Pvu8g2426 365 MobiDBLite consensus disorder prediction 292 365 - -
Pvu8g2426 365 MobiDBLite consensus disorder prediction 1 31 - -
Pvu8g2426 365 SMART DRBM_3 128 195 IPR014720 -
Pvu8g2426 365 SMART DRBM_3 43 110 IPR014720 -
Pvu8g2426 365 PANTHER RIBONUCLEASE III 34 318 IPR011907 GO:0003723|GO:0004525|GO:0006364
Pvu8g2426 365 Gene3D - 125 195 - -
Pvu8g2426 365 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 42 111 IPR014720 -
Pvu8g2426 365 Pfam Double-stranded RNA binding motif 129 191 IPR014720 -
Pvu8g2426 365 Pfam Double-stranded RNA binding motif 43 107 IPR014720 -
Pvu8g2426 365 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 127 196 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2426 Pvu-Chr8 54864873 54868946 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2426 - - ccaj:109793384 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2426 8 54864873 54868946 Pvu8g2426 8 54864873 54868946 ECH
Pvu1g2392 1 49248451 49250874 Pvu8g2426 8 54864873 54868946 PCT