Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1924 ATGGATCGTTTTCCTTCCAGTACCATTATCCCTGAATCGTTCCTAGGGGCCAAAGATGACCTCACCACACAGCTTGCATTGGTTTGGAATCAAATCAAAGCGCCATTGATTGTCCCGTTGCTGAGGCTAGCTGTGTTTCTGTGCTTGATCATGTCGGTGATGATGTTCATAGAGAGGGTCTACATGGGCGTTGTCATAACTCTGGTGAAGTTGTTCGTGAGAAAGCCCGAGAAACGTTACAAATGGGAGCCAATGAAGGACGACATAGAGTTGGGAAACTCTTCTTACCCTATGGTCCTCGTTCAAGTCCCCATGTACAACGAAAGAGAGGTTTATCAGCTCTCAATTGGTGCTGCGTGTGGGCTTTCTTGGCCTTCAGATAGGATCATCATACAGGTCCTTGATGACTCCACTGATCCAACAATCAAGGAGTTGGTGCAGCTTGAATGTCAAAGATGGGCAAGCAAAGGGGTGAACATAAAGTATGAGGTTAGAGACAACAGGAATGGGTACAAAGCAGGGGCTCTCAAAGAAGGCATGAAGCGTAGCTACGTGAAACAATGTGACTGTGTTGCAATCTTTGACGCTGATTTTCAACCAGAGCCCGATTTCTTGTGGCGCACCGTCCCATTCTTAGTGCACAATCCCGAACTAGCTCTCATTCAAGCACGGTGGAAATTTGTGAATGCCGATGAATGTTTGATGACCAGAATGCAAGAGATGTCACTGGATTACCATTTTACTGTGGAACAAGAAGTGGGGTCTTCCACTTACGCCTTCTTTGGATTCAATGGGACTGCGGGAGTATGGAGAATTTCGGCGTTGAATGAGGCTGGTGGATGGAAGGATAGGACCACAGTGGAAGATATGGACTTGGCTGTGCGAGCCAGTCTCAAAGGATGGAAATTCTTATACTTGTCCGACTTGAAGGTTAAAAATGAATTGCCAAGCACTCTCAAGGCCTACCGTTACCAGCAGCACCGTTGGTCTTGTGGTCCAGCCAATCTTTTTAGAAAAATGGTCTTGGAGATCATAAACAACAAGAAAGTGTCATTGTGGAAGAAAATACATGTGATATACAGCTTCTTCTTTGTTCGGAAGGTCGTAGCACACATCAACACCTTTGTGTTCTACTGCATTGTATTGCCTGCAACAGTTTTGGTGCCTGAGGTTGTGGTCCCAAAGTGGGGAGCTGTCTACATCCCTTCTGTCATCACAATTCTAAATGCAGTTGGAACTCCAAGGTCACTCCATTTGCTGGTCTTCTGGATTCTCTTTGAGAATGTCATGTCTCTGCACCGAACAAAGGCAACGATTATTGGCCTACTGGAGGCTAGTCGAGTGAACGAATGGGTTGTGACAGAAAAACTTGGTGATGCTTTGAAGGCTAAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAAGATTGGAGACAGGATTCACTTGTTAGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTGCTATGATGTTATGTTCGGGAAAAACCACTACTTCATATTCCTCTTTATCCAAGCTCTTGCCTTCTTCATTATGGCATTTGGATATGTCGGCACCATTGTTCCCCAGTCCTAG 1602 0.4551 MDRFPSSTIIPESFLGAKDDLTTQLALVWNQIKAPLIVPLLRLAVFLCLIMSVMMFIERVYMGVVITLVKLFVRKPEKRYKWEPMKDDIELGNSSYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTDPTIKELVQLECQRWASKGVNIKYEVRDNRNGYKAGALKEGMKRSYVKQCDCVAIFDADFQPEPDFLWRTVPFLVHNPELALIQARWKFVNADECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLSDLKVKNELPSTLKAYRYQQHRWSCGPANLFRKMVLEIINNKKVSLWKKIHVIYSFFFVRKVVAHINTFVFYCIVLPATVLVPEVVVPKWGAVYIPSVITILNAVGTPRSLHLLVFWILFENVMSLHRTKATIIGLLEASRVNEWVVTEKLGDALKAKAGGKAPKKPRFKIGDRIHLLELGVAFYLFFCGCYDVMFGKNHYFIFLFIQALAFFIMAFGYVGTIVPQS* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1924 533 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9-LIKE 1 532 - -
Pvu1g1924 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 373 IPR029044 -
Pvu1g1924 533 Pfam Glycosyltransferase like family 2 98 332 - -
Pvu1g1924 533 PANTHER - 1 532 - -
Pvu1g1924 533 CDD CESA_CaSu_A2 97 333 - -
Pvu1g1924 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 89 313 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1924 Pvu-Chr1 45082074 45087397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1924 1 532 Miscellaneous Gene Families AT5G03760 80.300 0.0 929
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1924 K13680 - gmx:100782772 1023.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1924 1 45082074 45087397 Pvu11g0923 11 8859147 8865349 ECH
Pvu1g1924 1 45082074 45087397 Pvu1g1924 1 45082074 45087397 ECH
Pvu1g1924 1 45082074 45087397 Pvu7g2300 7 46343343 46349901 PCT