Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1423 CTTGATTCCCTGAAGCCGAAGGAGAGCTTGGTGATCAGACAGAGATTTGGACTTGATGGGAAGGGTGACAGAACGTTGGGAGAAATTGCTAGGAACTTGAATATATCAAGGGAAATGGTAAGAAAGCACGAAGTGAAGGCTCTTATGAAGCTCAAGCATTCAGCTCGATTGGATTATCTTCGTCGTTATGTTGTATAA 198 0.4293 LDSLKPKESLVIRQRFGLDGKGDRTLGEIARNLNISREMVRKHEVKALMKLKHSARLDYLRRYVV* 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1423 65 Gene3D - 1 65 IPR036388 -
Pvu9g1423 65 PRINTS Major sigma-70 factor signature 4 16 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pvu9g1423 65 PRINTS Major sigma-70 factor signature 25 40 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pvu9g1423 65 PRINTS Major sigma-70 factor signature 40 51 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pvu9g1423 65 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 1 65 - -
Pvu9g1423 65 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 1 65 - -
Pvu9g1423 65 Pfam Sigma-70, region 4 1 53 IPR007630 GO:0003700|GO:0006352|GO:0006355
Pvu9g1423 65 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 1 63 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1423 Pvu-Chr9 20204300 20204642 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1423 K03093 - pvu:PHAVU_009G1376000 129.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1423 9 20204300 20204642 Pvu1g0631 1 7535226 7540023 PCT