LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu9g1422	ATGGGAGTTGTGACTGTTTCTAGCTCAGCAGCGAGGACTCCATTGGGATTGAATACAAAGTTTTCCTGTAATCGTCTGAAGAGACCTTTAATTATAGCATTTAAAGGGGATAAACACGATGACTCAGCTTTGGTTGCAACTCAAGAGAAAATCCCTGTGCCCGTTGAGACATCCAAGACGCAGAAGAAAAAGATGGGGAAAGCTAAGAAACTGCCTAAGAGAGAAAGGGTTGCCTTTGTGGAGGAAAATTCCCAAACTTCCTTGGATGTGGACTATAATGAAGCTGCTGCTATGCTTGAAAATATATACAAACTCAGCCCTGCTTCTGATACTGCTAATGCAGAATGTATGGATGGTAAAATCAAAAGGGTCTCCCGGAGAAGGAAGAAGATCGTTGACGATTGTGAAGAAAAGGATGTAAACGATGATAGGGTGGTCAGAAACCAGAACAAGAAAGCTAAACGGTTGGGTCTTGATCAGAGGATTTCATTAAAGAGTAACACAGATGGGGACGAAGTCGTTCCCACACAAAAGAAAAGAAATGCTAACAATAGTGTTGAGAAGATTGAAGAACTTATTAGGGAATATTCCGCATCAACTGATTTTGTGGGTATGGACTGGAGAAGAATGAAAATACCTCCCGTTCTTTCTTCTTCAGAGCATGCTTGGTTGTTCAAATTGATGCAACCTGTGAAGACAATACTTCAAGTGAAAGAAGATTTACAGAAGGAGCTAGCAAGAGAACCTGCTGATGGAGAACTAGCCAATGCAACAAACATGAGCATTGCTCATGTAAAGAAAGCACTGGAGGTTGGCCAAGCTGCAAGAAACAAACTCATAAAGCACAATCTCCGGCTTGTCTTGTTCGTGATCAACAAATATTTTACAGATTTTGCAAGTGGCTCTAGGTTTCAAGATCTTTGTCAGTCAGGAGTTAAGGGACTTATGACAGCAATTGATCGCTTTGAGCCAAACAGAAGATTTCGGCTATCAACATATAGTTTATTTTGGATAAGACATGCTATCACTCGTTCAATGACCCTCTCAAGCTTCACACGTGTTCCATTTGGACTTGAATCGGTTCGAGGAGAAATCCAAAAAGCTAAAACTAAGTTAACATTTGAGCTTCAGAGGTCACCAACGGAGGAAGAAATAATAGAAAGAGTTAATATATCCCCGGAAAGATACCATGAC	1194	0.4079	MGVVTVSSSAARTPLGLNTKFSCNRLKRPLIIAFKGDKHDDSALVATQEKIPVPVETSKTQKKKMGKAKKLPKRERVAFVEENSQTSLDVDYNEAAAMLENIYKLSPASDTANAECMDGKIKRVSRRRKKIVDDCEEKDVNDDRVVRNQNKKAKRLGLDQRISLKSNTDGDEVVPTQKKRNANNSVEKIEELIREYSASTDFVGMDWRRMKIPPVLSSSEHAWLFKLMQPVKTILQVKEDLQKELAREPADGELANATNMSIAHVKKALEVGQAARNKLIKHNLRLVLFVINKYFTDFASGSRFQDLCQSGVKGLMTAIDRFEPNRRFRLSTYSLFWIRHAITRSMTLSSFTRVPFGLESVRGEIQKAKTKLTFELQRSPTEEEIIERVNISPERYHD	398

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu9g1422	398	PANTHER	RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL	2	398	-	-
	Pvu9g1422	398	Pfam	Sigma-70 region 2	279	344	IPR007627	GO:0003700\|GO:0006352\|GO:0006355
	Pvu9g1422	398	SUPERFAMILY	Sigma2 domain of RNA polymerase sigma factors	197	346	IPR013325	GO:0003700\|GO:0006352\|GO:0006355
	Pvu9g1422	398	Gene3D	-	352	398	IPR036388	-
	Pvu9g1422	398	Gene3D	-	226	268	IPR036388	-
	Pvu9g1422	398	Gene3D	-	269	347	-	-
	Pvu9g1422	398	Coils	Coil	179	199	-	-
	Pvu9g1422	398	SUPERFAMILY	Sigma3 and sigma4 domains of RNA polymerase sigma factors	351	397	IPR013324	-
	Pvu9g1422	398	PANTHER	RNA POLYMERASE SIGMA FACTOR RPO	2	398	-	-
	Pvu9g1422	398	Pfam	Sigma-70 region 3	234	274	IPR007624	GO:0003700\|GO:0006352\|GO:0006355
	Pvu9g1422	398	Pfam	Sigma-70 region 3	363	397	IPR007624	GO:0003700\|GO:0006352\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu9g1422	Pvu-Chr9	20199460	20201746	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu9g1422	K03093		-	gmx:100812580	625.165

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu1g0631	1	7535226	7540023	Pvu9g1422	9	20199460	20201746	PCT