Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1194 ATGTCTTCTGCTGGTGTCACCATCCTTAGCCCTGTTCCAAGGGAACTATTGTTGTTCCCAGATGGATACCATTGGTCCCCACTGCACTTGTCATTGGATCCTGGGTTTATTTTCATATATCTCTCCCATTCTGGATCTTTGACTCCGATGCGAGTCCTTCCGTACGATACCATTGAGTCGGTGAAACTCAAAATCCAAAAGGGGCTTCCTTCATTGACAAACAAACAAAAGTTGGTTTGTGATGGGCGGGAGCTAGCGCGGAGCAATTCCCTGCTGAAGGACTATGGGGTGACTGAAGGAAATGTTTTGTATTTGGTGATTAGGCTGTCGGATCTCCAGACCATCAGTGTGAGAACCTCTTCTGGAAAAGACTTTACTTTTCAGGTGGAGAGATGCAGAGATGTTGGGTATGTTAAGCAGCAAATTGCGAAAAAGGAGAAGCATTTTGCTGATCCTGAACAGCAGGAGGTTGTGTGTAACGGGGAGCTGCTTGAGGATCAGAGGGTTATTGATGATATCTGTAGTAAATATAATGATGCAGTGATTCGTCTTTTTGTTAGAGAGAAATATGGAGAAGTTAGTACAGGACAAGATGAGTTGTCCGTCAAGGCGAGGGAGTTGAATGGTACAAAAGATTACGATGTTAGTGAAAATAATTGTAGGAGAGAACTTGATGTTAGTAAAGAAGATCCGGGAAGAGAGGATGAAGCTGCTGAGCAAATTGTCCCAAGGAAGACTGTTGATAGAAATCTTCTTTTGGAGCCTGTCATTGTTAATAAGAAAATTGAATTAGCTTCAGAGATTTGGAATATGATAAACTTTACATATGAAGGACTAACCAGTGGAAATTATCCAATCAGATCTGCAGAGGGTACAGGGGGAGCTTACTTTATGCTTGATTCAACCGGGCAAAAGTATGTAGCTGTTTTTAAGCCCATTGATGAAGAGCCAATGGCTGTGAATAACCCTAGAGGTTTACCTTTCTCAGTAGATGGTGAAGGCTTAAAGAAGGGTACGAAAGTTGGTCAGGGTGCATTCAGGGAAGTTGCAGCTTATATTTTAGACCATCCAATGAGTGGTCGTCGATCATTATTTGGTGATCAGAAGGGCTTTTCTGGGGTTCCCCCGACTGTTCTGGTTAAGTGTTTGCATGAAGGATTTAATCATCCTGGGGACTTGACTACTAAGCTTGGCTCCTTGCAAATGTTCATGGAGAATAATGGAAGTTGCGAGGATATGGGTCCTGGGGCATTTCCAGTGAAGGAAGTGCATAAAATTACTGTTCTGGACATGAGACTCGCAAATGCAGATAGACATGCTGGGAATATTTTGATAGGCAAAGATGATGAAAATGACCAGGCTGTTTTGATTCCAATTGATCATGGATACTGCTTGCCCACTAGTTTTGAAGATTGCACCTTTGAATGGCTTTATTGGCCCCAAGCTCGCCAACCATACTCCCCTGAGATCATTGACTATATAAGGTCACTGAATGCCGATGAAGATATTGCCCTTTTGAAGTTTCATGGATGGAATCTGCCAGTTGAATGTGCCCGCACGCTTCAGATCTCAACCATGCTTCTGAAGAAAGGAGTGGAGAGAGGGATGACACCCTTTGCCATTGGAAGCCTAATGTGTAGGGAATCCTTGAACAAGGAGTCTGTGATAGAGGGAATTGTAAAGGCAGCTCTGGATTCTGTTCTTCCTGCCACAAGTGAAGAAACATTTCTGGATGCTGTTTCTGAAATCATGGACCAACACCTTGATGAGATTCTGTCATAG 1782 0.4321 MSSAGVTILSPVPRELLLFPDGYHWSPLHLSLDPGFIFIYLSHSGSLTPMRVLPYDTIESVKLKIQKGLPSLTNKQKLVCDGRELARSNSLLKDYGVTEGNVLYLVIRLSDLQTISVRTSSGKDFTFQVERCRDVGYVKQQIAKKEKHFADPEQQEVVCNGELLEDQRVIDDICSKYNDAVIRLFVREKYGEVSTGQDELSVKARELNGTKDYDVSENNCRRELDVSKEDPGREDEAAEQIVPRKTVDRNLLLEPVIVNKKIELASEIWNMINFTYEGLTSGNYPIRSAEGTGGAYFMLDSTGQKYVAVFKPIDEEPMAVNNPRGLPFSVDGEGLKKGTKVGQGAFREVAAYILDHPMSGRRSLFGDQKGFSGVPPTVLVKCLHEGFNHPGDLTTKLGSLQMFMENNGSCEDMGPGAFPVKEVHKITVLDMRLANADRHAGNILIGKDDENDQAVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPEIIDYIRSLNADEDIALLKFHGWNLPVECARTLQISTMLLKKGVERGMTPFAIGSLMCRESLNKESVIEGIVKAALDSVLPATSEETFLDAVSEIMDQHLDEILS* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1194 593 SUPERFAMILY Ubiquitin-like 33 110 IPR029071 -
Pvu10g1194 593 ProSiteProfiles Ubiquitin domain profile. 37 108 IPR000626 GO:0005515
Pvu10g1194 593 Gene3D - 111 195 - -
Pvu10g1194 593 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 592 IPR044571 -
Pvu10g1194 593 Gene3D - 37 110 - -
Pvu10g1194 593 SUPERFAMILY Protein kinase-like (PK-like) 428 591 IPR011009 -
Pvu10g1194 593 Pfam Ubiquitin family 43 109 IPR000626 GO:0005515
Pvu10g1194 593 Pfam Ubiquitin family 115 188 IPR000626 GO:0005515
Pvu10g1194 593 CDD Ubl_ubiquitin_like 115 185 - -
Pvu10g1194 593 Pfam Phosphatidylinositol 3- and 4-kinase 291 540 IPR000403 -
Pvu10g1194 593 ProSiteProfiles Ubiquitin domain profile. 113 172 IPR000626 GO:0005515
Pvu10g1194 593 SMART ubq_7 37 108 IPR000626 GO:0005515
Pvu10g1194 593 SMART ubq_7 113 187 IPR000626 GO:0005515
Pvu10g1194 593 SUPERFAMILY Ubiquitin-like 107 188 IPR029071 -
Pvu10g1194 593 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 592 - -
Pvu10g1194 593 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 282 575 IPR000403 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1194 Pvu-Chr10 38008280 38011427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1194 1 590 Acyl Lipid Metabolism Gene Families AT5G24240 53.613 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1194 - - gmx:100815111 1063.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1194 10 38008280 38011427 Pvu9g0546 9 9885933 9890018 ECH
Pvu10g1194 10 38008280 38011427 Pvu10g1194 10 38008280 38011427 ECH
Pvu2g1699 2 30662780 30665691 Pvu10g1194 10 38008280 38011427 ECH
Pvu6g1189 6 22888862 22891524 Pvu10g1194 10 38008280 38011427 PCT