Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0546 ATGGCTTGTGTGGCACTTCGTCCTCTGCCTGAAGAATCTTTCAACACCGGTAGTGAATTCACCGGCTGCTTCAATTCTCTTTTGAGGGACTCAATTTTGATTTACCTAACTGTTGGTGGATCTGTGATTCCTATGCGTATTATGGAGACAGATTCAATTGCTTCAGTGAAGCTGAGAATTCAAACCTTTAAAGGATTTTTTGTAAAAAAACAGAAACTGGTTTTTGAAGGGAAGGAGTTGGCTCGTAACAGATCTTGTATCCGTGATTATGGGGTTGGTGATGGGAATGTTCTGCACCTGGTGCTGAGGCTTTCTGATCTCAAAGCTATTACGGTTAAGACTGTGTGTGGAAAGGAGTTTGGGCTTTATGTTGAGAAGAGTAGGAGTGTCGGTTATGTGAAGCAGCAGATTGCAAAAAAAGGGCAAGGGTTAGTAGATCTTAAGGATCAAGAACTGACATGTGAAGGTGAGGCACTTGAAGACCAGAGACTTATTGAGGATATCTGTAAGGACAATGATGCTGTAATTCATTTTTTGGTCAGAATATCAGATGCCAAGGTAAGGACTAAACCAGTCGAGAAGGATTTTGAATTGTCCATTGAGGCATCATATTCACACAATCTGGTGTCAAATTTACATGCAGACCAGTTAGCGTCAGTTTCTGTAACAAATGAGATCCGGGAGAAGAATCGATTATCAAGGAATTCTCTTGTGGAACCAATTATTATGAGTTCCAACAACAAAATTTCACCAGTGATTCACAATATAATTAAGATCACTTCAGAGGGGTTAGAAAATGGCTGTAAACCAATTCAATCTCCAGAGGGATCAGGAGGAGCTTATCTAATGCAAGATTCATCTGGCTTGAAGTATATTTCTGTTTTCAAACCCATTGATGAAGAGCCAATGGCAATTAATAACCCTCGAGGCCTACCTATTTCCCAGGACGGTGAAGGGCTAAAGAAAGGTACACGGGTAGGGCAAGGTGCGTTGAGAGAAGTTGCAGCTTACATTTTGGATCATCCTAGGAAAGGACCACGCTCATATCATAGCAATGAGGAACCAGGATTTGCTGGAGTTCCACCTACAGTCATGGTCAAATGCCTGCATAAAGGATTTCATAATGTTGAAGGTTATCAAAATCTTTCTAAAGTAGGATCGCTTCAGATGTTTATGAGGAATATTGGAAGTTGTGAAGACGTGGGCCCTAGTGCTTTTCCGGTGGAAGAGGTACACAAGATCACTGTGCTGGATATCAGATTGGTAAATGCAGATAGGCATGCAGGCAACATTTTGATTGCTAAGGATGGTGAAGACGGTGCTACAATCCTCATTCCAATTGATCATGGCTATTGCTTGCCTGAGAGCTTTGAAGACTGCACTTTTGACTGGTTATACTGGCCACAAGCTAAGGAACCCTACTCTGCAGACACCATTGATTACATAAAATCTCTGGATGCTGAAGAAGACATAAAGCTTTTGAAGTTTCATGGATGGGATCTTCCTCCTAAGTGTGCCCTGATCCTTCGTATATCAACCATGCTTCTTCAGAAAGGGGCAGAGAGAGGACTCACTCCGTTTGCCATAGGAAGCATCATGTGTAGAGAAACACTGAAGAAAAAATCTGTGATTGAACAAATTGTGCAGGAGGCTGAAGAAGCTGCTTTTCCTGGAGCAAGTGAAGCTGCATTTCTTGATCTCGTTTCAGTGATCATGGATAGTCATTTGAATGAGCTATTCCCATTTGACTGA 1752 0.4184 MACVALRPLPEESFNTGSEFTGCFNSLLRDSILIYLTVGGSVIPMRIMETDSIASVKLRIQTFKGFFVKKQKLVFEGKELARNRSCIRDYGVGDGNVLHLVLRLSDLKAITVKTVCGKEFGLYVEKSRSVGYVKQQIAKKGQGLVDLKDQELTCEGEALEDQRLIEDICKDNDAVIHFLVRISDAKVRTKPVEKDFELSIEASYSHNLVSNLHADQLASVSVTNEIREKNRLSRNSLVEPIIMSSNNKISPVIHNIIKITSEGLENGCKPIQSPEGSGGAYLMQDSSGLKYISVFKPIDEEPMAINNPRGLPISQDGEGLKKGTRVGQGALREVAAYILDHPRKGPRSYHSNEEPGFAGVPPTVMVKCLHKGFHNVEGYQNLSKVGSLQMFMRNIGSCEDVGPSAFPVEEVHKITVLDIRLVNADRHAGNILIAKDGEDGATILIPIDHGYCLPESFEDCTFDWLYWPQAKEPYSADTIDYIKSLDAEEDIKLLKFHGWDLPPKCALILRISTMLLQKGAERGLTPFAIGSIMCRETLKKKSVIEQIVQEAEEAAFPGASEAAFLDLVSVIMDSHLNELFPFD* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0546 583 ProSiteProfiles Ubiquitin domain profile. 108 185 IPR000626 GO:0005515
Pvu9g0546 583 Gene3D - 109 198 - -
Pvu9g0546 583 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 4 2 579 - -
Pvu9g0546 583 SMART ubq_7 108 181 IPR000626 GO:0005515
Pvu9g0546 583 SMART ubq_7 32 103 IPR000626 GO:0005515
Pvu9g0546 583 Pfam Phosphatidylinositol 3- and 4-kinase 276 528 IPR000403 -
Pvu9g0546 583 Pfam Ubiquitin family 38 104 IPR000626 GO:0005515
Pvu9g0546 583 Pfam Ubiquitin family 110 181 IPR000626 GO:0005515
Pvu9g0546 583 Gene3D - 29 106 - -
Pvu9g0546 583 SUPERFAMILY Protein kinase-like (PK-like) 419 580 IPR011009 -
Pvu9g0546 583 SUPERFAMILY Ubiquitin-like 104 183 IPR029071 -
Pvu9g0546 583 SUPERFAMILY Ubiquitin-like 37 105 IPR029071 -
Pvu9g0546 583 CDD Ubl_ubiquitin_like 110 177 - -
Pvu9g0546 583 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 2 579 IPR044571 -
Pvu9g0546 583 ProSiteProfiles Ubiquitin domain profile. 30 103 IPR000626 GO:0005515
Pvu9g0546 583 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 267 563 IPR000403 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0546 Pvu-Chr9 9885933 9890018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0546 1 578 Acyl Lipid Metabolism Gene Families AT5G24240 59.794 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0546 - - gmx:100812724 1018.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1194 10 38008280 38011427 Pvu9g0546 9 9885933 9890018 ECH
Pvu9g0546 9 9885933 9890018 Pvu9g0546 9 9885933 9890018 ECH