Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0989 ATGGGAGAAGCATCAGAAAGGTATGCAGTTGTGACAGGTGCAAATAAAGGAATTGGATTAGAGATAGTGAAGCAGTTAGCCTCAGCTGGGATCAAGGTGGTGCTCACAGCAAGAAATGAGGAGAGGGGTCTGCATGCAATGGAAACAATAAAAGCCTCAGCTCTATCTCACCTTGTAATGTTTCATCACCTCGATGTGGCTGATGCAACCACTGTAGCCTCTCTGGCTGATTTTATCAAATCTAAATTTGGGAAACTTGATATTCTGGTTAACAATGCAGGGATTGGTGGAGCAGTAATCAAAGACATTGATATATTTCCTTCAGTTCTCCTCAACCGTGGGATTGTATCGGAAGAAGATGGAACAAAGGCAATGACTCAAACATACGAGTTAGCTGAAGAATGCTTGCAAATAAATTACTATGGAACTAAAATAACTGTAGAAGCACTTATGCCCCTCCTCCAATTATCTGATTCACCAACAATTGTGAATGTATCATCCACTATGGGACAGTTAGAGAGTTTCCCTAAAGAATCATGGGCAAGAGGAGTGTTGAGTGATGGTGATAACCTGACAGAAGAGAAAGTGGATGAAATAGTGAAGAAGTTTCTAAGAGATTTCAAAGAAGGTTCATTAGAAAGTGAAGGGTGGCCTAGGTATCCAGGTGCCTATATTGTGTCAAAAGCTGCTATGAATGGATATACAAGAATCCTTGCTAAGAAACATCCTTCATTCTGCATCAATAGTGTTTGCCCTGGTTACGTGAAGACAGACATAACATCCAACACTGGCCTCCTCACAGTTGAAGAAGGTGCTGCTAGTCCTGTCAAGCTTGCACTGCTTCCCAATGGAACTCCATCTGGCTTCTTCTATTACAGAACTCATGTGGCTTCCTTTTGA 900 0.4178 MGEASERYAVVTGANKGIGLEIVKQLASAGIKVVLTARNEERGLHAMETIKASALSHLVMFHHLDVADATTVASLADFIKSKFGKLDILVNNAGIGGAVIKDIDIFPSVLLNRGIVSEEDGTKAMTQTYELAEECLQINYYGTKITVEALMPLLQLSDSPTIVNVSSTMGQLESFPKESWARGVLSDGDNLTEEKVDEIVKKFLRDFKEGSLESEGWPRYPGAYIVSKAAMNGYTRILAKKHPSFCINSVCPGYVKTDITSNTGLLTVEEGAASPVKLALLPNGTPSGFFYYRTHVASF* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0989 299 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Pvu10g0989 299 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Pvu10g0989 299 PRINTS Glucose/ribitol dehydrogenase family signature 224 243 IPR002347 -
Pvu10g0989 299 PRINTS Glucose/ribitol dehydrogenase family signature 243 260 IPR002347 -
Pvu10g0989 299 Pfam short chain dehydrogenase 8 173 IPR002347 -
Pvu10g0989 299 CDD carb_red_PTCR-like_SDR_c 7 293 IPR045313 GO:0016616
Pvu10g0989 299 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 284 IPR036291 -
Pvu10g0989 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Pvu10g0989 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 168 IPR002347 -
Pvu10g0989 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 224 243 IPR002347 -
Pvu10g0989 299 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 7 299 - -
Pvu10g0989 299 Gene3D - 3 299 - -
Pvu10g0989 299 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0989 Pvu-Chr10 34690796 34695515 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0989 3 260 Acyl Lipid Metabolism Gene Families AT1G63380 26.136 1.71e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0989 K15095 - gmx:102663482 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0989 10 34690796 34695515 Pvu10g0989 10 34690796 34695515 ECH
Pvu8g0696 8 6173449 6175734 Pvu10g0989 10 34690796 34695515 PCT
Pvu10g0989 10 34690796 34695515 Pvu8g0695 8 6170197 6172214 PCT