Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02146 ATGACTGTGATGACTCCTGCTCCCATTGACCAGCAGGAGGACGAGGAGATGCTTGTCCCGCACACGGATTTGGCTGAGAATAATCACCAACCCATGGAAGTTGTGGCTCAACCTGATGCTGCCAACACCGTGGAGAGTCAGCCTGTCGAGGATCCTTCGACGACAAGATTCACATGGAGAATTGACAACTTTTCTAGGATGAATACAAAGAAGCTCTATTCAGAAATATTTGTTGTTGGTGGTTATAAATGGCGTGTACTTATTTTCCCAAAAGGGAACAATGTGGACTATTTGTCCATGTATTTGGATGTTGCAGATTCAGCTAGTTTGCCCTATGGCTGGAGTAGATATGCACAGTTTAGCTTGGCAGTCGTTAATCAAATCCATAATAAATACTCTGTGAGAAAAGACACACAGCACCAATTCAATGCGCGAGAAAGTGATTGGGGTTTCACGTCCTTCATGCCGCTTGGTGAATTGTATGATCCTAGTAGAGGGTATCTTGTGAATGATACCCTTGTAGTTGAAGCTGAGGTTCTTGTTCGTAGAATTGTTGATTACTGGACTTATGATTCAAAAAAGGAGACTGGCTATGTTGGACTTAAGAACCAGGGAGCCACATGTTATATGAATTCTCTACTCCAAACTCTGTACCATATTCCTTATTTTCGAAAGGCTGTATACCATATGCCAACAACAGAGAATGACATGCCTTCTGGAAGCATCCCTTTGGCTTTGCAAAGTTTATTTTACAAGCTCCAGTATAGTGACACCAGTGTTGCGACAAAGGAGCTCACTAAATCTTTTGGATGGGATACATATGATTCTTTCATGCAGCATGACGTTCAAGAACTGAACAGAGTTCTTTGTGAAAAACTTGAAGACAAGATGAAGGGAACTGTTGTTGAGGGAACTATACAGAAGTTATTTGAAGGGCATCATATGAACTATATCGAATGCATCAATGTGGACTATAAATCAACTAGAAAGGAGTCATTTTATGACCTTCAGCTTGATGTGAAAGGCTGTCCTGATGTTTATGCTTCCTTTGACAAGTATGTTGAAGTTGAACGTCTTGAAGGGGACAACAAATATCATGCAGAACAATATGGTTTGCAGGATGCTAGGAAGGGTGTCCTATTCATTGATTTCCCTCCTGTTCTTCAGCTTCAACTGAAAAGATTTGAATATGACTTTATGCGGGATACTATGGTAAAGATTAATGACCGTTATGAGTTTCCCTTGCAACTTGACCTTGATCGTGAGAATGGAAAGTATCTATCACCTGAGGCTGATAGGAATGTCCGCAATCTTTACACACTTCATAGCGTTTTGGTTCACAGTGGTGGTGTGCATGGTGGACATTATTATGCTTTTATCAGGCCAACTCTATCTGAACAGTGGTATAAATTTGATGATGAGAGGGTGACTAAAGAAGACACTAAACGGGCATTAGAGGAGCAATATGGTGGCGAGGAAGAGTTACCGCAGACAAATCCTGGATTTAACAACACTCCTTTTAAATTCACCAAGTATTCAAATGCTTATATGCTGGTGTATATACGTGAAGCTGACAAGGACAAAGTAATATGCAATGTGGATGAGAAAGACATTGCTGAACATTTAAGGGAGAGGTTGAAGAAAGAACAAGAAGAAAAAGAGCACAAAAAGAAAGAAAAAGCAGAGGCTCACCTTTACACTATTATAAAGGTGGCACGAGATGATGACCTTGCAGAGCAGATTGGAAAGGATATATATTTTGATCTTGTAGACCATGACAAAGTGAGGAGTTTCCGTGTCCAAAAACAGACATCTTTTAACCTTTTTAAGGAAGAGGTTGCTAAAGAGTTTGGCATACCGGTTCAATTCCAGCGCTTTTGGCTATGGGCAAAGCGGCAAAACCATACATATCGTCCAAATCGACCGTTGACACACTTGGAAGAAGCACAATCTGTTGGACAATTGAGAGAGGTATCCAATAAGGTTCACAATGCAGAATTGAAATTGTTTTTGGAAGTGGAGCTCGGGCTGGATTTACGTCCCATTGCACCACCTGACAAGACAAAGGATGATATATTACTTTTCTTCAAGTTATATGATCCTGAAAAAGAGGAGCTACGTTTCGTTGGAAGGTTCTTTGTGAAGAGTACTGGTAAGCCATCAGAAATCTTAACGAGGTTAAATAAAATGGCTGGTTATGATCCTGATGAAGAGATTGGACTATATGAGGAAATTAAATTTGAGCCAAATGTTATGTGTGAACCGATTGATAAGAAAGTAACATTTCGAGCAAGCCAGTTAGAAGATGGAGATATTGTATGCTTTCAGAAAGCTCCTGCTATAGACAGTGAGGAACATGTCCGCTATCCAGATGTGCCTTCATACCTAGAATATGTGCACAATCGCCAGGTTGTTCACTTTCGATCTCTAGAAAAACCCAAGGAAGATGACTTCTGCCTGGAGATGTCAAGGCTCTATACATATGATGATGTGGTGGAGAAAGTGGCTCAACAACTTGGTTTGGACGATCCATCCATAATTAGGCTTACCCCTCACAATTGCTACTCTCAACAACCAAAACCCCAACCCATTAAGTATCGTGGTGTGGAACATTTGTCTGATATGCTGGTTCACTACAATCAGACTTCGGATATATTGTACTATGAAGTACTTGACATACCTCTGCCAGAATTACAAGGTTTGAAAACCCTGAAAGTTGCATTTCACCATGCTACCAAGGATGAAGTGGTTATTCATACCATCAGACTCCCAAAGCAGAGCACTGTGGGGGATGTCCTTGATGATCTGAAAACAAAGGTGGAATTGTCTGATCCTGAAGCCGAGCTTAGGTTGCTTGAAGTTTTCTATCACAAGATATACAAGGTCTTCCCTCCCAATGAAAAGATTGAAAACATTAATGATCAATACTGGACATTACGTGCAGAGGAGATACCAGAAGAAGAGAAAAATCTGGGTCCTCATGATCGTCTAATCCATGTGTATCATTTCACTAAAGACACAGCTCAGAACCAAATGCAAATTCAGAACTTTGGTGAACCCTTTTTCTTGGTCATACATGAAGGGGAGACTTTGGCTGAAATTAAAGTAAGAATACAGAAGAAACTTCAAGTTCCTGATGATGAGTTTGTCAAGTGGAAATTTGCCTTTTTTTCATTAGGTCGTCCTGAATACCTTCAGGATACTGACATTGTATCCAGTCGTTTTCAGAGGAGAGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAGCATACTGACAATGCTCCTAAAAGATCATATGCTGTTAACCAGAATCGCCACACTTTCGAGAAGCCAGTAAAGATTTATAATTAG 3357 0.4057 MTVMTPAPIDQQEDEEMLVPHTDLAENNHQPMEVVAQPDAANTVESQPVEDPSTTRFTWRIDNFSRMNTKKLYSEIFVVGGYKWRVLIFPKGNNVDYLSMYLDVADSASLPYGWSRYAQFSLAVVNQIHNKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPSRGYLVNDTLVVEAEVLVRRIVDYWTYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCPDVYASFDKYVEVERLEGDNKYHAEQYGLQDARKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPEADRNVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSEQWYKFDDERVTKEDTKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIREADKDKVICNVDEKDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDDDLAEQIGKDIYFDLVDHDKVRSFRVQKQTSFNLFKEEVAKEFGIPVQFQRFWLWAKRQNHTYRPNRPLTHLEEAQSVGQLREVSNKVHNAELKLFLEVELGLDLRPIAPPDKTKDDILLFFKLYDPEKEELRFVGRFFVKSTGKPSEILTRLNKMAGYDPDEEIGLYEEIKFEPNVMCEPIDKKVTFRASQLEDGDIVCFQKAPAIDSEEHVRYPDVPSYLEYVHNRQVVHFRSLEKPKEDDFCLEMSRLYTYDDVVEKVAQQLGLDDPSIIRLTPHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVIHTIRLPKQSTVGDVLDDLKTKVELSDPEAELRLLEVFYHKIYKVFPPNEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKDTAQNQMQIQNFGEPFFLVIHEGETLAEIKVRIQKKLQVPDDEFVKWKFAFFSLGRPEYLQDTDIVSSRFQRRDVYGAWEQYLGLEHTDNAPKRSYAVNQNRHTFEKPVKIYN 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02146 1118 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 52 195 IPR008974 GO:0005515
Pumo9g02146 1118 FunFam Ubiquitin carboxyl-terminal hydrolase 13 802 899 - -
Pumo9g02146 1118 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 624 876 IPR024729 -
Pumo9g02146 1118 Pfam Ubiquitin-specific protease C-terminal 886 1096 IPR029346 -
Pumo9g02146 1118 SUPERFAMILY TRAF domain-like 53 184 - -
Pumo9g02146 1118 Gene3D - 802 899 - -
Pumo9g02146 1118 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 45 525 - -
Pumo9g02146 1118 Gene3D Cysteine proteinases 196 524 - -
Pumo9g02146 1118 SMART math_3 56 160 IPR002083 GO:0005515
Pumo9g02146 1118 ProSiteProfiles MATH/TRAF domain profile. 54 179 IPR002083 GO:0005515
Pumo9g02146 1118 FunFam Ubiquitin carboxyl-terminal hydrolase 13 684 801 - -
Pumo9g02146 1118 FunFam Ubiquitin carboxyl-terminal hydrolase 13 196 524 - -
Pumo9g02146 1118 SUPERFAMILY Cysteine proteinases 194 551 IPR038765 -
Pumo9g02146 1118 Coils Coil 532 563 - -
Pumo9g02146 1118 FunFam Ubiquitin carboxyl-terminal hydrolase 13 52 195 - -
Pumo9g02146 1118 Gene3D - 684 801 - -
Pumo9g02146 1118 Pfam MATH domain 61 180 IPR002083 GO:0005515
Pumo9g02146 1118 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 439 456 IPR018200 GO:0004843|GO:0006511
Pumo9g02146 1118 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 199 523 IPR028889 -
Pumo9g02146 1118 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 200 215 IPR018200 GO:0004843|GO:0006511
Pumo9g02146 1118 CDD peptidase_C19C 197 523 - -
Pumo9g02146 1118 Pfam Ubiquitin carboxyl-terminal hydrolase 199 520 IPR001394 GO:0004843|GO:0016579
Pumo9g02146 1118 CDD MATH 56 179 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02146 Pumo-Chr9 52730023 52743546 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02146 199 488 Miscellaneous Gene Families AT2G24640 24.290 2.09e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02146 K11838 - gmx:100800328 2205.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02146 9 52730023 52743546 Pumo9g02146 9 52730023 52743546 ECH
Pumo5g03311 5 82281333 82284123 Pumo9g02146 9 52730023 52743546 ECH
Pumo3g02949 3 52583448 52585734 Pumo9g02146 9 52730023 52743546 ECH