Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03311 ATGGACAATCAGAAGGGAACGAGTATTAGTTTTGAGACATTCACGTGGAAAATTGAAAATTTCTCAAAACAAAACACCAAGAAACTACAATCCAAGGCTTTCCGAATCCGAGGTTATAAATGGCTGATTCGTTTGTATCCATTAATGAAAAATGTTGACCATTTTTCATTATATTTGATGGTTGCGGATTCTTTACCACCGTATGGATGGAACAGAAATACGTATTTCAAGTTGGCTCTAATTAATCAATTGGATGGCAATAAATCAGTTGTAAAGGAGACTCAGCAGAAGTTCAATGGTGGGTATCGTAGCTGGGGCTCATTTTTCGTGAATGTTAGTGACTTCTATGACTCTAAACAAGGCTATCTTGTGAATGACACATGCATCATTGAAGCTCACATTTGTGTCTCCGATCTTAGCACTCTTCAAGCTAACAATTACTTAAACAAACTTACTCCAACCATAGACTCTAAATTAGGTGATCAAGCAGCAAGAAATTCAGAATCCACACAGCAGGAAAATGATACAGAAATAGAAACAGAAACATCAGATGAGAGTGAGACACTTAGTTCAGCAACCAGTGGATCTAGTCAAACAGAAGGGGAAGTTCAAAGTTCAGATTTGACACTAAAAGACCTTCTAGATTTGGGGAGTTTAGGAAAAGAAGAAGCAGCTTTTGTTCCACTGTTGGAGGAAGCATGCATATGGCATCCTTCCCTGATAAGGAGCCAGCGGAAAAGTTCTAGATGGTTCAAACTATGGGCATTCACATCTTTAGGCCAAGTTTTGCATTTACTCAAGACAAGTAAGGTGAAGGATATGAATGAAGATGCATGCAATCACCTTCAAGGTTTATGGGAAGAACTTGTTAAGCACTCCGGATTTCAATTGTCTTGGTTGGAGCCTTATGTTCAATCTGCATTGGGTATGAAAGCTCATTTGGAAAAAACAGCTGAAGTGAATAAACTCAAAGACAGTGTGGTTGCTTTGGAGATTAAAATGAAGAAGTTGAGGGGAGAGTTGGCAGCTGCAGAAGCTGAGTTTGAGGTAGCAAGGAGGGCCTTGGCCGAGGCAAGAAAAGGTTTCATAGAGATGGATTTGAATGATGATTTAGGTTATGCCATATTTTAG 1131 0.3917 MDNQKGTSISFETFTWKIENFSKQNTKKLQSKAFRIRGYKWLIRLYPLMKNVDHFSLYLMVADSLPPYGWNRNTYFKLALINQLDGNKSVVKETQQKFNGGYRSWGSFFVNVSDFYDSKQGYLVNDTCIIEAHICVSDLSTLQANNYLNKLTPTIDSKLGDQAARNSESTQQENDTEIETETSDESETLSSATSGSSQTEGEVQSSDLTLKDLLDLGSLGKEEAAFVPLLEEACIWHPSLIRSQRKSSRWFKLWAFTSLGQVLHLLKTSKVKDMNEDACNHLQGLWEELVKHSGFQLSWLEPYVQSALGMKAHLEKTAEVNKLKDSVVALEIKMKKLRGELAAAEAEFEVARRALAEARKGFIEMDLNDDLGYAIF 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03311 376 CDD MATH 13 134 IPR002083 GO:0005515
Pumo5g03311 376 SUPERFAMILY TRAF domain-like 13 137 - -
Pumo5g03311 376 MobiDBLite consensus disorder prediction 161 205 - -
Pumo5g03311 376 Coils Coil 320 361 - -
Pumo5g03311 376 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 10 155 IPR008974 GO:0005515
Pumo5g03311 376 Pfam MATH domain 18 134 IPR002083 GO:0005515
Pumo5g03311 376 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 11 355 - -
Pumo5g03311 376 MobiDBLite consensus disorder prediction 185 205 - -
Pumo5g03311 376 SMART math_3 13 115 IPR002083 GO:0005515
Pumo5g03311 376 ProSiteProfiles MATH/TRAF domain profile. 11 134 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03311 Pumo-Chr5 82281333 82284123 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03311 - - gmx:102664376 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03311 5 82281333 82284123 Pumo5g03311 5 82281333 82284123 ECH
Pumo5g03311 5 82281333 82284123 Pumo9g02146 9 52730023 52743546 ECH
Pumo3g02947 3 52534580 52537902 Pumo5g03311 5 82281333 82284123 PCT