Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02129 ATGTACAGAGATCGAGGAAGCGTCGGATCCAAATCGGAAGTAACTTCCGTTGATCGAAAGCGAATCAACGACGTTCTTGATAAACAGCTCGAACGATCCTCGCCGTCCACATCCAGAGCCGCCGCCATCAACGGCAAGGATAGGTCCTCCTCTTCCCTCTTAGCCGCCGCCAAGGACTCCCGCTCCTCCTCCGTCACCGCCCCTATCTCCAAGAATTCCAACGCTTCCGACGAGGAATCTGAAACAGACAGCGAGGAGTCTGATGTTAGTGGTTCCGATGGAGATGACACGTCTTGGATCTCTTGGTTCTGCAATTTGAGGGGAAATGAATTCTTCTGCGAGGTTGATGACGATTACATCCAGGATGACTTCAACCTGTGTGGATTAAGCAGTCAAGTGCCTTACTATGATTATGCTCTGGATTTGATTTTGGATGTTGAATCCTCCCACGGTGACATGTTTACTGAGGAACAAAATGAGTTAATTGAATCAGCGGCTGAGATGCTTTATGGTTTGATTCATGCCCGATACATATTGACAAGCAAAGGAATGGCTGCAATGCTGGACAAGTACAAGAACTATGATTTTGGCAGATGCCCCCGAGTTTACTGCTCTGGACAACCTTGTATTCCAGTTGGTCAGTCAGACATCCCTAGGTCTAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGACATTTACTATCCTCGGTCCAAGTATCAAGGCAACATCGATGGAGCTTATTTTGGAACTACATTTCCTCACCTGTTCCTGATGACTTATGGACAACTAAAGCCACAGAAACCATCACAGAGCTATGTCCCAAGAGTTTTTGGCTTCAAACTTCACAAGCCCTGA 858 0.4685 MYRDRGSVGSKSEVTSVDRKRINDVLDKQLERSSPSTSRAAAINGKDRSSSSLLAAAKDSRSSSVTAPISKNSNASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCIPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGFKLHKP 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02129 285 SUPERFAMILY Casein kinase II beta subunit 96 284 IPR035991 GO:0005956|GO:0019887
Pumo8g02129 285 PANTHER CASEIN KINASE II SUBUNIT BETA 77 284 IPR000704 GO:0005956|GO:0019887
Pumo8g02129 285 MobiDBLite consensus disorder prediction 29 75 - -
Pumo8g02129 285 MobiDBLite consensus disorder prediction 14 28 - -
Pumo8g02129 285 PRINTS Casein kinase II regulatory subunit family signature 115 129 IPR000704 GO:0005956|GO:0019887
Pumo8g02129 285 PRINTS Casein kinase II regulatory subunit family signature 170 191 IPR000704 GO:0005956|GO:0019887
Pumo8g02129 285 PRINTS Casein kinase II regulatory subunit family signature 195 216 IPR000704 GO:0005956|GO:0019887
Pumo8g02129 285 PRINTS Casein kinase II regulatory subunit family signature 217 238 IPR000704 GO:0005956|GO:0019887
Pumo8g02129 285 PRINTS Casein kinase II regulatory subunit family signature 98 114 IPR000704 GO:0005956|GO:0019887
Pumo8g02129 285 PRINTS Casein kinase II regulatory subunit family signature 245 262 IPR000704 GO:0005956|GO:0019887
Pumo8g02129 285 SMART CK_II_beta_2 98 281 IPR000704 GO:0005956|GO:0019887
Pumo8g02129 285 Gene3D - 196 270 - -
Pumo8g02129 285 FunFam Casein kinase II subunit beta 91 195 - -
Pumo8g02129 285 Pfam Casein kinase II regulatory subunit 98 281 IPR000704 GO:0005956|GO:0019887
Pumo8g02129 285 ProSitePatterns Casein kinase II regulatory subunit signature. 199 230 IPR000704 GO:0005956|GO:0019887
Pumo8g02129 285 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 91 195 IPR016149 GO:0005956|GO:0019887
Pumo8g02129 285 MobiDBLite consensus disorder prediction 1 94 - -
Pumo8g02129 285 FunFam Casein kinase II subunit beta 196 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02129 Pumo-Chr8 58317629 58321074 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02129 K03115 - gmx:100799304 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02129 8 58317629 58321074 Pumo8g02129 8 58317629 58321074 ECH
Pumo8g02129 8 58317629 58321074 Pumo4g01753 4 23086420 23089480 PCT
Pumo4g01751 4 23043688 23045892 Pumo8g02129 8 58317629 58321074 PCT