Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03497 ATGAAGCATTCTCATATTTTACCACTAGCATTCTGTATATTTTTCCTTACTTTAGTTATTCTCGTCCAAGCTAGGCATCATTCTCATACAAAACACAAGCACTCACATTCTCATAAATCTTCTAAAACTTCAAAGCCAAAACCTCCTAGCCCTCCACATAATCAGAACTATAACAATGCCTCAGGCATTTTTGATGTACGAACATTTGGGGCAATAGGAGATGGAGAAACAGATGATACAGAGTCATTCAAGATGGCATGGGACACTGCCTGCCAAAGTGAATCAGCAGTTAAAGTTATCCTTGTACCCCAAGGTTTCTCCTTCCTCATTCAGTCCACTATCTTCACTGGTCCTTGTCAAGGTGTCTTGGTGTTGAAGGTTGATGGAACTCTTATGCCACCTGATGGACCTGAATCTTGGCCAAAGAACAACAGTAGGCACCAATGGCTGGTCTTTTATAGAATCAATGGAATGTCACTGGAAGGAAGTGGTTTAATAGATGGGAGAGGAGAAAAATGGTGGGACCTTCCCTGTAAGCCTCACAAGGGACCTCATGGAACAACACTCCCAGGACCTTGTGATAGCCCAATTGCCATAAGGTTTTTTATGAGTTCCAACTTGACTGTGCAAGGACTTAGGATAAAGAACAGTCCCCAGTTCCATTTCAGATTTGATGGCTGCAAAAACGTCCATATAGAATCAATCTACATAAAAGCTCCAAAACTAAGCCCCAACACTGATGGAATTCACATAGAAAATACCAATGATGTGAAAATATACAATTCTGTTATTTCTAATGGTGATGACTGTGTATCCATTGGATCCGGCTGCAATGATGTTGATATCAAGAACATTACATGTGGACCTGGTCATGGAATTAGCATTGGTAGTCTGGGAAATCACAACTCTCGAGCCTGTGTTTCAAACATTATGGTGAGAGACTCATTTATAAAAATGACAGATAATGGGGTTAGGATCAAGACTTGGCAAGGTGGATCAGGATCAGTATCTGGAGTGACATTCAGCAATATCCACATGGTTAGTGTAAGAAATCCCATCATAATTGACCAGTTCTACTGCCTCACTAAGGAGTGCACCAACAAGACCTCTGCAGTATCTGTTTCAAATATTATTTACACAAACATAAAGGGGACCTATGATATAAGGAGCCCACCTATGCGTTTTGCTTGCAGTGACTCTGTCCCATGCACCAACTTAACACTCTCAGATATTGAGCTTCTTCCAGCTCAAGGAGATATAGTGCATGATCCTTTCTGTTGGAATGCTTATGGAGATTTGGAGACACTAACCATTCCACCGGTTTCTTGCTTGCTTGAGGGCACTCCTCAGTCAGTGTTAGACTATGACATAACTCGTTGCTGA 1383 0.4143 MKHSHILPLAFCIFFLTLVILVQARHHSHTKHKHSHSHKSSKTSKPKPPSPPHNQNYNNASGIFDVRTFGAIGDGETDDTESFKMAWDTACQSESAVKVILVPQGFSFLIQSTIFTGPCQGVLVLKVDGTLMPPDGPESWPKNNSRHQWLVFYRINGMSLEGSGLIDGRGEKWWDLPCKPHKGPHGTTLPGPCDSPIAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCKNVHIESIYIKAPKLSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGSGCNDVDIKNITCGPGHGISIGSLGNHNSRACVSNIMVRDSFIKMTDNGVRIKTWQGGSGSVSGVTFSNIHMVSVRNPIIIDQFYCLTKECTNKTSAVSVSNIIYTNIKGTYDIRSPPMRFACSDSVPCTNLTLSDIELLPAQGDIVHDPFCWNAYGDLETLTIPPVSCLLEGTPQSVLDYDITRC 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03497 460 Gene3D - 49 447 IPR012334 -
Pumo5g03497 460 ProSitePatterns Polygalacturonase active site. 284 297 IPR000743 GO:0004650|GO:0005975
Pumo5g03497 460 MobiDBLite consensus disorder prediction 29 43 - -
Pumo5g03497 460 PANTHER - 63 431 - -
Pumo5g03497 460 FunFam Polygalacturonase At1g48100 family 52 447 - -
Pumo5g03497 460 Pfam Glycosyl hydrolases family 28 95 413 IPR000743 GO:0004650|GO:0005975
Pumo5g03497 460 SUPERFAMILY Pectin lyase-like 61 450 IPR011050 -
Pumo5g03497 460 SMART pbh1 277 297 IPR006626 -
Pumo5g03497 460 SMART pbh1 307 328 IPR006626 -
Pumo5g03497 460 SMART pbh1 254 275 IPR006626 -
Pumo5g03497 460 SMART pbh1 227 253 IPR006626 -
Pumo5g03497 460 SMART pbh1 336 357 IPR006626 -
Pumo5g03497 460 MobiDBLite consensus disorder prediction 29 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03497 Pumo-Chr5 84267137 84270071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03497 58 460 Glycoside Hydrolase AT1G02460 71.429 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03497 - - gmx:100778836 885.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03497 5 84267137 84270071 Pumo5g03497 5 84267137 84270071 ECH
Pumo5g03497 5 84267137 84270071 Pumo3g02138 3 33068805 33071186 ECH
Pumo2g00057 2 1237396 1239604 Pumo5g03497 5 84267137 84270071 ECH
Pumo5g03497 5 84267137 84270071 Pumo3g02138 3 33068805 33071186 PCT