Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02138 ATGAGGCATTCTCACATTTTGCCACTAGCATTGTCCTTATATTTTCTTACTTTAGTATCTCTTCCCACCCAAGCTAGGCACCATTACCATAAGAAACACAACCACTCATATCATCATAATGCACCTGAAATTTCACCATCTCCTGCTCCACTGCCTGCACCTTCTAATGCTCCTGATGAAGCTCCTAGTCCTAGCCCCACTGATAACGAGAGCTACCACAATGCATCAAACTTATTTGATGTACGAATATTTGGGGCCATTGGAGATGGAATAACTGATGATACAGAGTCATTCAAGATGGCATGGGACACTGCCTGCGAAAGTGACTCACCGGTTAAAGTTATCCTTGTTCCTCAAGGTTTCTCCTTCATTATTCAATCTACTATTTTCACAGGTCCTTGTAAAGGTGGCTTGGTACTAAAGGTTGATGGCACTCTTATGCCACCTGATGGACCTGAATCCTGGCCAAAGAACAACAGTAAGCGTCAATGGCTTGTCTTTTATAGAATCAATGGGATGTCACTTGAAGGAAGTGGTTTAATAGATGGGAGAGGAGCAAAATGGTGGGACCTTCCTTGTAAGCCTCACAAGGGACCTCATGGGACAACATCTCCAGGACCTTGTGACAGCCCAGTTGCCATAAGGTTTTTCATGAGTTCCAACTTGACTGTACAAGGACTTAGGATCAAGAACAGCCCCCAATTCCACTTCAGATTTGATGGCTGCGAAAGTGTCCACGTGGAATCAATTTACATAACAGCTCCAGCACTAAGCCCCAACACTGATGGAATACACATAGAAAATACCAGTGACGTGAAAATATACAATTCAGTCATTTCCAATGGTGATGACTGCGTGTCCATTGGAGCCGGTTGCCATGATGTTGATATAAAGAACATCACATGTGGACCTGGTCATGGAATTAGCATTGGTAGTCTGGGAAACCACAACTCTAGAGCCTGTGTTTCAAACATTACGGTGAGGGACTCGGTTATAAAAGTGTCAGATAATGGGGTTAGAATCAAGACATGGCAAGGTGGATCAGGATCAGTATCAGGTGTGACATTCAGTAATATTCACATGGAAAGTGTAAGGAACCCTATTATAATTGACCAGTTTTACTGCCTCAGTAAGGATTGCTCGAACAAGACCTCTGCAGTGTTCATAAAGGACATAGTTTACACAAACATAAAGGGAACATATGACATAAGGCATCCACCTATGCGTTTTGCTTGCAGTGACTCTGTCCCATGCACCAACTTGACCCTCTCAGATATTGAGCTTCTTCCTGCTCAAGGGGACATAGTGCTTGATCCTTTCTGCTGGAGTGCCTATGGAAATTCTGAGACACTAACCATTCCCCCAGTCTTTTGCTTGCTGGAAGGCCTTCCTCAGTCCATTTCAGGCAATGATATAGATCATTGCTGA 1428 0.4363 MRHSHILPLALSLYFLTLVSLPTQARHHYHKKHNHSYHHNAPEISPSPAPLPAPSNAPDEAPSPSPTDNESYHNASNLFDVRIFGAIGDGITDDTESFKMAWDTACESDSPVKVILVPQGFSFIIQSTIFTGPCKGGLVLKVDGTLMPPDGPESWPKNNSKRQWLVFYRINGMSLEGSGLIDGRGAKWWDLPCKPHKGPHGTTSPGPCDSPVAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCESVHVESIYITAPALSPNTDGIHIENTSDVKIYNSVISNGDDCVSIGAGCHDVDIKNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSDNGVRIKTWQGGSGSVSGVTFSNIHMESVRNPIIIDQFYCLSKDCSNKTSAVFIKDIVYTNIKGTYDIRHPPMRFACSDSVPCTNLTLSDIELLPAQGDIVLDPFCWSAYGNSETLTIPPVFCLLEGLPQSISGNDIDHC 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02138 475 Pfam Glycosyl hydrolases family 28 112 428 IPR000743 GO:0004650|GO:0005975
Pumo3g02138 475 ProSitePatterns Polygalacturonase active site. 299 312 IPR000743 GO:0004650|GO:0005975
Pumo3g02138 475 SUPERFAMILY Pectin lyase-like 75 463 IPR011050 -
Pumo3g02138 475 MobiDBLite consensus disorder prediction 45 61 - -
Pumo3g02138 475 PANTHER - 77 447 - -
Pumo3g02138 475 FunFam Polygalacturonase At1g48100 family 67 462 - -
Pumo3g02138 475 Gene3D - 63 457 IPR012334 -
Pumo3g02138 475 MobiDBLite consensus disorder prediction 29 72 - -
Pumo3g02138 475 SMART pbh1 292 312 IPR006626 -
Pumo3g02138 475 SMART pbh1 322 343 IPR006626 -
Pumo3g02138 475 SMART pbh1 269 290 IPR006626 -
Pumo3g02138 475 SMART pbh1 351 372 IPR006626 -
Pumo3g02138 475 SMART pbh1 242 268 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02138 Pumo-Chr3 33068805 33071186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02138 78 475 Glycoside Hydrolase AT1G02460 72.569 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02138 - - gmx:100792285 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02138 3 33068805 33071186 Pumo3g02138 3 33068805 33071186 ECH
Pumo5g03497 5 84267137 84270071 Pumo3g02138 3 33068805 33071186 ECH
Pumo2g00057 2 1237396 1239604 Pumo3g02138 3 33068805 33071186 ECH
Pumo5g03497 5 84267137 84270071 Pumo3g02138 3 33068805 33071186 PCT