Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00057 ATGAGTCTCATTCACTGGTCTTTCATCCTATGGATCACCATGATGCTTTTTATCCATAATTTGGATAATGTGGAAGGAAGATACCACAATCACAAGAGGCAGAAGAAAAATCCCCCTGCTCCTAAGCCACCTGCTAAGTCCCCTACACCACCAGAGGAACCTCCTTCACCCCCTTCCAATCCCCCAAGTGTTCCCTCTGACCCTTATCCAAATGATCCTGGTGACTCCCCTTCAGGCTGCATTTTCGATGTCAGATCCTTTGGTGCAGTTGGAGATGGTTCAGCTGATGACACAGATGCAATCGTGGCAGCTTGGAAAGAAGCTTGTGCAGTAGAGTCAGGGGTTGTTCTTCTTCCAGAAGATTACTGTTTCAAGATCACTTCAACTATCTTTACTGGTCCATGCAAGCCAGGACTAGTATTTCAAGTGGATGGTACTCTGTTGGCACCAGATGGTCCAGAATCTTGGCCCAAGGAAGATAGCCACAGTCAATGGCTTGTGTTCTATCGACTTGATCAAATGACTCTTACTGGGAAAGGAACCATAGAAGGCAATGGGGAACAGTGGTGGGATCTTCCTTGCAAACCTCACAGGGGTCCAGATGGAAAAACTGTATCAGGACCATGTGATAGCCCTACAATGATACGGTTCTTCATGAGCTCCAATTTGGTGCTGAGCGGGGTGAAAATTCAAAACAGTCCAATGTTCCACGTGAAATTCGATGGTTGCCAAGGAGTACTGATTGATAAGTTGTCAATTTCTTCGCCTAAACTCAGTCCCAATACTGATGGAATCCACTTAGGAAACACAAGGGGTGTTGGAATATATAACTCCATGATAAGCAATGGTGATGATTGCATTTCAATTGGACCCGGGTGCTCAGATGTGGACATAGAGGGTGTTACTTGTGCTCCTACCCACGGTATTAGCATTGGAAGCCTTGGAGTGCACAACTCCCAGGCATGTGTCTCAAACTTAACTGTCCGCAACACCATCATAAGGAATCAGACAATGGCCTCAGGATCAAGACATGGCAAGGTGGAACGGGCTCAGTGA 1056 0.464 MSLIHWSFILWITMMLFIHNLDNVEGRYHNHKRQKKNPPAPKPPAKSPTPPEEPPSPPSNPPSVPSDPYPNDPGDSPSGCIFDVRSFGAVGDGSADDTDAIVAAWKEACAVESGVVLLPEDYCFKITSTIFTGPCKPGLVFQVDGTLLAPDGPESWPKEDSHSQWLVFYRLDQMTLTGKGTIEGNGEQWWDLPCKPHRGPDGKTVSGPCDSPTMIRFFMSSNLVLSGVKIQNSPMFHVKFDGCQGVLIDKLSISSPKLSPNTDGIHLGNTRGVGIYNSMISNGDDCISIGPGCSDVDIEGVTCAPTHGISIGSLGVHNSQACVSNLTVRNTIIRNQTMASGSRHGKVERAQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00057 351 Gene3D - 74 349 IPR012334 -
Pumo2g00057 351 Pfam Glycosyl hydrolases family 28 123 337 IPR000743 GO:0004650|GO:0005975
Pumo2g00057 351 PANTHER - 81 337 - -
Pumo2g00057 351 MobiDBLite consensus disorder prediction 40 72 - -
Pumo2g00057 351 SUPERFAMILY Pectin lyase-like 80 338 IPR011050 -
Pumo2g00057 351 MobiDBLite consensus disorder prediction 29 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00057 Pumo-Chr2 1237396 1239604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00057 9 335 Glycoside Hydrolase AT1G48100 68.807 1.18e-158 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00057 - - gmx:100785528 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00057 2 1237396 1239604 Pumo2g00057 2 1237396 1239604 ECH
Pumo2g00057 2 1237396 1239604 Pumo5g03497 5 84267137 84270071 ECH
Pumo2g00057 2 1237396 1239604 Pumo3g02138 3 33068805 33071186 ECH