Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03135 ATGGATCGCTTTTCTTCCCGTACCATTATCCCCGAAGCGTTTCAAGGGGCCAAAGATGACTTCACCATGCAGCTTGCATTGGTTTGGAATCAAATCAAAGCGCCATTGATTGTCCCGTTGCTGAGACTTGCAGTGTTTCTGTGCTTGATCATGTCGGTGATGATGTTCATTGAGAGGGTCTACATGGGCATTGTCATCACATTGGTGAAGTTGTTTGGGAGAAAGCCAGAGAAACGTTACAAATGGGAGCCGATGAAGGACGACATAGAGTTGGGAAACTCTTCTTACCCAATGGTCCTCGTTCAAGTCCCCATGTACAACGAAAGAGAGGTCTATCAGTTGTCTATTGGAGCAGCATGTGGGCTTTCTTGGCCTTCAGATAGGATCATCATACAAGTCCTTGATGACTCCACTGACCCAACAATCAAGGAGTTGGTGCAGCTTGAATGCCAAAGATGGGCAAGCAAAGGGGTGAACATAAAGTATGAGGTTAGGGACAATAGGAATGGGTACAAAGCAGGGGCTCTCAAAGAAGGCATGAAGCGAAGCTACGTGAAACAATGTGATTGTGTTGCTATCTTTGACGCTGATTTTCAACCAGAGCCTGATTTCTTGTGGCGCACCGTTCCATTCCTCGTGCACAATCCCGAATTAGCCCTCATTCAAGCTCGGTGGAAATTTGTGAATGCCGATGAATGTTTGATGACCAGAATGCAAGAGATGTCACTAGATTACCATTTTACTGTGGAACAAGAAGTGGGGTCTTCCACTTACGCCTTCTTCGGTTTCAACGGGACTGCGGGAGTATGGAGAATTTCGGCGTTGAATGAGGCTGGTGGATGGAAGGATAGGACCACAGTGGAAGATATGGACTTGGCTGTGCGAGCCAGTCTCAAAGGATGGAAATTCTTATACTTGTCTGACTTGAAGGTTAAAAATGAGTTGCCAAGTACTTTCAAGGCCTACCGCTACCAACAGCACCGTTGGTCTTGTGGTCCAGCCAATCTTTTTAGGAAAATGGTCATGGAGATCATAAACAACAAGAAAGTGACATTGTGGAAGAAGATACATGTAATTTACAGCTTCTTCTTTGTTCGGAAGGTGGTAGCACACATCAACACGTTTGTGTTTTATTGCATTGTATTACCTGCAACAGTTTTGGTGCCTGAGGTTGTGGTCCCAAAGTGGGGAGCTGTCTATATCCCTTCCGTCATCACTATTCTAAATGCAGTTGGAACTCCAAGGTCACTCCATTTGCTGGTCTTCTGGATTCTCTTTGAGAATGTTATGTCTCTGCATCGAACAAAGGCAACGATCATTGGTCTGCTAGAGGCTAGTCGAGTGAATGAATGGGTTGTCACTGAAAAACTTGGTGATGCTCTCAAGGCTAAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGAATCGGAGAGAGGATTCACTTGCTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTGCTATGATGTTATGTTCGGGAAAAACCACTTCTTCATCTTCCTCTTTATCCAATCTCTTGCCTTCTTCATCATGGCATTTGGATATGTTGGCACCATTGTTCCCAGCTCCTAA 1602 0.4519 MDRFSSRTIIPEAFQGAKDDFTMQLALVWNQIKAPLIVPLLRLAVFLCLIMSVMMFIERVYMGIVITLVKLFGRKPEKRYKWEPMKDDIELGNSSYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTDPTIKELVQLECQRWASKGVNIKYEVRDNRNGYKAGALKEGMKRSYVKQCDCVAIFDADFQPEPDFLWRTVPFLVHNPELALIQARWKFVNADECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLSDLKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEIINNKKVTLWKKIHVIYSFFFVRKVVAHINTFVFYCIVLPATVLVPEVVVPKWGAVYIPSVITILNAVGTPRSLHLLVFWILFENVMSLHRTKATIIGLLEASRVNEWVVTEKLGDALKAKAGGKAPKKPRFRIGERIHLLELGVAFYLFFCGCYDVMFGKNHFFIFLFIQSLAFFIMAFGYVGTIVPSS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03135 533 Pfam Glycosyltransferase like family 2 98 332 - -
Pumo5g03135 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 89 313 IPR029044 -
Pumo5g03135 533 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 18 528 - -
Pumo5g03135 533 FunFam Glucomannan 4-beta-mannosyltransferase 9 88 316 - -
Pumo5g03135 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 373 IPR029044 -
Pumo5g03135 533 CDD CESA_CaSu_A2 97 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03135 Pumo-Chr5 80119795 80125775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03135 1 532 Miscellaneous Gene Families AT5G03760 80.675 0.0 933
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03135 K13680 - gmx:100782772 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03135 5 80119795 80125775 Pumo11g01363 11 43641308 43646658 ECH
Pumo5g03135 5 80119795 80125775 Pumo5g03135 5 80119795 80125775 ECH
Pumo5g03135 5 80119795 80125775 Pumo3g03148 3 57943922 57950471 PCT