Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03148 ATGGAGTCGTTTCAAGGTGCCAAGGATAACATTTCCTACCAAAAAATGGGTTTGGTTTGGAGCCAATTGAAGGAGCCAGTGATCGTGCCACTGCTGAGAGTGGCAGTGTTTCTGTGCCTGGGCATGTCAGTGATGATGCTGGTCGAGAGGGTGTACATGTTCTTCGTCATTTGCTTGGTTAAGCTGTTTGGTCGAAGACCCGAGAAGCGTTACAAGTGGGAGCCTATGAAGGACGATGTTGAGTTGGGAAACTCTAGTTATCCCATGGTCTTGGTCCAAGTCCCAATGTACAACGAAAGAGAGGTTTTTCAACTATCAATCGGTGCCGCTTGTGGCCTTTCTTGGCCTTCAAATAGAATCATCATACAAGTTCTTGATGATTCTACTGATAACACAATCAGGGAGATGGTGCAAATGGAATGTAGCAGATGGGCAAGCAAAGGAGTGAACATAAAGTACGAGGTAAGGGACAACAGAAAAGGGTACAAAGCTGGGGCTCTAAAAGAAGGCATGAAACACAGCTACGTGAAGCAATGTGACTATGTTGCCATCTTTGACGCGGATTTTCAACCAGAGCCTGATTTCCTCTGGCGAACTGTCCCATTCCTTGCCAACAACCCTGAACTTGGTCTTGTTCAGGCACGCTGGAAGTTTGTGAATGCCAATGAATGTTTGATGACCAGGATGCAAGAGATGTCACTGGATTACCATTTCACTGTGGAACAAGAAGTGGGGTCTTCCACTTACGCCTTCTTTGGCTTCAACGGAACTGCTGGTGTATGGAGAATTTCGGCGCTGAATGATGCTGGGGGGTGGATAGATAGGACCACAGTGGAAGATATGGACCTGGCTGTCCGAGCCAGTCTCAAAGGATGGAAATTCTTGTACCTGGCCAATTTGAAGGTTAAAAATGAATTGCCAAGTACTCTGAAGGCCTACCGCTTCCAACAGCACAGGTGGTCTTGTGGACCAGCCAATCTTTTCAAGAAAATGCTCATGGAGATTATGGGAAACAAGAAAGTGTCCTTGTGGAAGAAGTTGTATGTGATTTACAGCTTCTTCTTTGTCCGGAAGGTGGTGGCCCACATCAACACTTTTTTGTTCTATTGCATTGTGTTACCTGCAACAGTTGTGGTGCCTGAGGTGGCGGTCCCCAAGTGGGGTGCTGTGTATATCCCTTCCATCATCACACTCCTAAATGCTGTTGGAACTCCTAGGTCACTCCACTTACTGGTCTTTTGGATTCTCTTTGAGAATACCATGTCTCTGCATAGAACAAAGGCAACAATTATTGGTCTACTAGATGCTAGTCGAGTGAATGAATGGATTGTCACAGATAAACTTGGAGATCGAGTGAAAGAATGGATTGTCACTCACAAACCTGGACCTGCTCTAAAGGGTAAAGGTGGGGATAAAGCACCCAAGAAGATTCGGTTCAGGATTGGAGAAAGGATTCACATGTTGGAACTTCTTGTTGGATTCTACCTCTTCTTCTGTGGCTGCTATGATATTATGTTCGGGAAAAACCGCTACTACATATTCCTATATATCCAATCAATTGCTTTCTTCATCATGGCATTTGGATGTATTGGCACTTTCGTTCCCACCAACTCCTAG 1617 0.4533 MESFQGAKDNISYQKMGLVWSQLKEPVIVPLLRVAVFLCLGMSVMMLVERVYMFFVICLVKLFGRRPEKRYKWEPMKDDVELGNSSYPMVLVQVPMYNEREVFQLSIGAACGLSWPSNRIIIQVLDDSTDNTIREMVQMECSRWASKGVNIKYEVRDNRKGYKAGALKEGMKHSYVKQCDYVAIFDADFQPEPDFLWRTVPFLANNPELGLVQARWKFVNANECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISALNDAGGWIDRTTVEDMDLAVRASLKGWKFLYLANLKVKNELPSTLKAYRFQQHRWSCGPANLFKKMLMEIMGNKKVSLWKKLYVIYSFFFVRKVVAHINTFLFYCIVLPATVVVPEVAVPKWGAVYIPSIITLLNAVGTPRSLHLLVFWILFENTMSLHRTKATIIGLLDASRVNEWIVTDKLGDRVKEWIVTHKPGPALKGKGGDKAPKKIRFRIGERIHMLELLVGFYLFFCGCYDIMFGKNRYYIFLYIQSIAFFIMAFGCIGTFVPTNS 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03148 538 SUPERFAMILY Nucleotide-diphospho-sugar transferases 85 366 IPR029044 -
Pumo3g03148 538 FunFam Glucomannan 4-beta-mannosyltransferase 9 79 307 - -
Pumo3g03148 538 Pfam Glycosyl transferase family group 2 181 377 IPR001173 -
Pumo3g03148 538 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 79 303 IPR029044 -
Pumo3g03148 538 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 13 532 - -
Pumo3g03148 538 CDD CESA_CaSu_A2 88 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03148 Pumo-Chr3 57943922 57950471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03148 2 537 Miscellaneous Gene Families AT5G03760 75.605 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03148 K13680 - gmx:100810016 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03148 3 57943922 57950471 Pumo11g01363 11 43641308 43646658 ECH
Pumo3g03148 3 57943922 57950471 Pumo3g03148 3 57943922 57950471 ECH
Pumo5g03135 5 80119795 80125775 Pumo3g03148 3 57943922 57950471 PCT