Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02687 ATGAAGATGAGGGAAGGCCGCGGCAGCACGGATGCATACTGTGTTGCCAAGTATGGCCAAAAATGGGTCAGAACCAGAACAATTCTTGACACTTTTAGTCCAAAATGGAATGAGCAATACACATGGGAGGTTTATGATCCTTGCACTGTGATAACACTTGGTGTTTTTGACAACTGCCATTTAGGTGGAGGGGAAAAAGCCACTGCTGGCACTGCAGCCAGGGATTCAAGAATTGGAAAGGTAAGAATTAGGCTCTCAACACTTGAAGCTAATAGGATATACACTCATAGCTACCCACTCCTTGTTTTGCACCCACATGGTGTCAAGAAAATGGGTGAACTTCAGCTAGCAGTGAGGTTCACTAGCCTCTCACTGGCTAACATGGTTTACATTTATGGCCAACCCTTGCTTCCAAAGCTGCATTACTTGCGCCCTTTCACTGTTAACCAAGTAGAGAGTTTGAGGTACCAAGCAATGAACATTGTGGCTGTGAGGCTTGGAAGAGCTGAACCTCCCCTCAGGAAGGAGGTAGTAGAGTACATGTTGGATGTTGATTCCCATATGTGGAGCATGAGAAGAAGCAAAGCCAACTTCTTCCGCATCATGTCACTTTTCTCTGGCATCATCACAATGGGGCAATGGTTCAGCCAAGTTTGCCATTGGAAGAACCCCATCACATCAATCCTAGTTCACATCCTCTTCCTTATACTCATTTGCTACCCTGAATTGATACTTCCAACCTTGTTCCTCTACATGTTCTTCATTGGCCTGTGGAACTACAGGTTCAGGCCTAGACACCCACCCCACATGGACACAAAACTCTCATGGGCAGAAGCAGTTCACCCCGACGAACTCGACGAAGAGTTCGACACATTCCCAACTTCTAGACCAAATGATGTGGTGAGAATGAGGTATGACAGGCTTAGAAGTGTGGCAGGAAGGATTCAAACAGTTGTTGGGGACATAGCAACACAGGGAGAGAGGTTTCAGTCTCTACTGAGTTGGAGAGACACCAGAGCAACCAGCCTCTTTGTAGTCTTCAGCCTTTGTTCAGCTGTGGTTCTCTATGCAACACCACCAAAAGTGGTGGCTATGGTAACAGGTTTGTACTATCTTCGCCATCCAAAGTTTCGTAGCAAACTTCCTTCTGTGCCAAGCAACTTCTTCAAGAGGCTTCCAGCTAGAACAGATAGCATGCTGTGA 1203 0.4638 MKMREGRGSTDAYCVAKYGQKWVRTRTILDTFSPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKATAGTAARDSRIGKVRIRLSTLEANRIYTHSYPLLVLHPHGVKKMGELQLAVRFTSLSLANMVYIYGQPLLPKLHYLRPFTVNQVESLRYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMSLFSGIITMGQWFSQVCHWKNPITSILVHILFLILICYPELILPTLFLYMFFIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSRPNDVVRMRYDRLRSVAGRIQTVVGDIATQGERFQSLLSWRDTRATSLFVVFSLCSAVVLYATPPKVVAMVTGLYYLRHPKFRSKLPSVPSNFFKRLPARTDSML 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02687 400 SMART C2_3c 1 97 IPR000008 -
Pumo4g02687 400 Pfam Plant phosphoribosyltransferase C-terminal 245 400 IPR013583 -
Pumo4g02687 400 CDD C2D_MCTP_PRT_plant 1 117 IPR047255 -
Pumo4g02687 400 ProSiteProfiles C2 domain profile. 1 98 IPR000008 -
Pumo4g02687 400 Pfam C2 domain 5 100 IPR000008 -
Pumo4g02687 400 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 1 400 IPR047259 -
Pumo4g02687 400 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 122 IPR035892 -
Pumo4g02687 400 FunFam C2 domain-containing protein 1 124 - -
Pumo4g02687 400 Gene3D C2 domain 1 121 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02687 Pumo-Chr4 48131571 48132773 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02687 1 400 Lipid Metabolism Gene Families AT5G48060 78.250 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02687 - - gmx:100785340 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02635 5 72423869 72426628 Pumo4g02687 4 48131571 48132773 ECH
Pumo3g02872 3 50081373 50085114 Pumo4g02687 4 48131571 48132773 ECH
Pumo3g00076 3 1064706 1069779 Pumo4g02687 4 48131571 48132773 ECH
Pumo4g02687 4 48131571 48132773 Pumo4g02687 4 48131571 48132773 ECH