Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02872 ATGCAGAGGCCTCCACCTGAAGATTTTCTCTTGAAGGAGACCAAGCCCCACCTTGGAGGGGGAAAGGTTTCCGGTGATAAACTCACCAGTACCTATGATCTCGTTGAGCAAATGCAGTACCTTTACGCGAGGGTCGTGAAGGCGAAGGACTTGCCCGCGAAGGATATCACTGGGAGTTGTGATCCTTATGTTGAAGTCAAGCTTGGGAACTACAAGGGCACCACCAGGCATTTCGAGAAGAACACCAATCCAGAGTGGAACCAGGTTTTCGCCTTCTCGAAGGACCGGCTTCAGGCCTCGGTGTTGGAGGTTACTGTGAAGGATAGGGATCTTGTGAAGGATGACTTCATTGGCAGGGTTTGGTTTGACCTGAATGAGATCCCGAAAAGGGTGCCTCCGGATAGTCCTCTGGCGCCTCAGTGGTATAGATTGGAGGATAGGAAGGGTGACAAGGTGAGGGGAGAGCTGATGCTGGCTGTTTGGATGGGTACACAGGCTGATGAGGCTTTTCCTGAAGCTTGGCACTCGGATGCTGCGACGGTTGGTGGGAGTGATGCTATTGCGAACATTAGATCGAAAGTGTATCTGTCTCCCAAGCTTTGGTATTTGAGGGTTAATGTGATAGAGGCACAGGACTTGCAGCCGACCGATAAGGGTAGATACCCTGAGGTTTTTGTGAAGGCTATTCTGGGGAATCAGGCCTTGAGGACTAGAATCTCTCATAGTAGGAGTATTAACCCAATGTGGAATGAGGATTTGATGTTTGTGGCGGCGGAACAGTTTGAGGAGCATCTGATTTTGAGTGTGGAGGATAGAGTTGCGCCTAACAAGGATGAAGTGTTGGGGAGGTGTGCAATTCCTCTGCAGTATGTGGAAAAGAGACTAGATCACAAACCTGTGAACACAAGGTGGTTCAATCTGGAAAGGCATATTGTGGTAGAAGGGGAGAAGAAGAAGGATACCAAGTTTGCAAGCAGGATTCACATGAGGATTTGTCTAGAAGGTGGTTATCATGTTTTAGATGAATCTACTCACTACAGCAGTGATCTTCGCCCAACAGCGAAACAGCTGTGGCATCCTGGTATCGGTGTTCTTGAACTGGGGATATTGAATGCTCAGGGTTTGATGCCGATGAAAATGAAAGATGGGGGGAGGGGGACAACGGATGCTTATTGTGTAGCAAAATATGGGCAGAAGTGGGTCAGGACGAGGACAATCATTGATAGCTTTGCACCACGGTGGAATGAGCAATATACTTGGGAGGTTTTTGATCCATGCACTGTCATTACAATTGGTGTATTTGATAACTGTCATCTGCATGGTGGTGACAAGGCTGGAGGGGCAAGAGATGCAAAGATTGGAAAGGTACGGATTCGTCTTTCCACCCTTGAGACTGATCGAGTCTACACACATTCCTATCCACTTCTTGTTCTTCACCCAAATGGGGTGAAGAAGACGGGTGAGATTCACTTTGCTGTGAGGTTCACTTGTTCATCTTTGATTAATATGATGCACATGTATTCAAAGCCCTTGCTGCCAAAAATGCACTATATACACCCCTTGACCGTTAGCCAGCTTGACAATTTGAGGCATCAAGCTACTCAGATTGTTTCAATGAGACTGAGTCGCGCTGAGCCGCCGCTGAGAAAAGAGGTAGTGGAATATATGCTGGATGTGGGTTCCCACATGTGGAGTATGAGAAGAAGCAAAGCTAACTTCTTCAGGATTATGGGGGTTTTGAGTGGCCTAATTGCTGTAGGAAAATGGTTTGATCAGATTTGCAATTGGAGAAGTCCAATCACTACAATTCTGATCCATATCTTGTTCATAATATTGGTTATGTATCCAGAGCTTATCTTACCAACAATTTTCCTTTACCTCTTCTTGATTGGAATTTGGTACTATAGATGGAGGCCAAGGCACCCTCCTCACATGGACACTCGTCTCTCTCACGCGGATTCAGCGCATCCTGATGAACTCGATGAAGAATTTGACACATTCCCAACCTCCCGGCAAAATGACATTGTGAGGATGCGATACGATCGACTTAGAAGCGTTGCTGGGAGGATTCAAACTGTGGTTGGGGACTTGGCCACTCAGGGTGAAAGGCTGCAATCATTGCTGAGCTGGCGTGATCCGAGAGCTACATCACTGTTTGTGATTTTCTGTCTGGTTGCTGCTATTGTACTGTATGTCACTCCATTCCAAGTTGTGGCCCTCCTGTCTGGAATATATGTGTTGAGACATCCGAGGTTTCGTCATAAGCTTCCTTCGGTGCCACTGAATTTCTTCCGGAGGCTGCCTGCAAGAACTGATTGCATGCTTTGA 2328 0.4712 MQRPPPEDFLLKETKPHLGGGKVSGDKLTSTYDLVEQMQYLYARVVKAKDLPAKDITGSCDPYVEVKLGNYKGTTRHFEKNTNPEWNQVFAFSKDRLQASVLEVTVKDRDLVKDDFIGRVWFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVGGSDAIANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRYPEVFVKAILGNQALRTRISHSRSINPMWNEDLMFVAAEQFEEHLILSVEDRVAPNKDEVLGRCAIPLQYVEKRLDHKPVNTRWFNLERHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWHPGIGVLELGILNAQGLMPMKMKDGGRGTTDAYCVAKYGQKWVRTRTIIDSFAPRWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDAKIGKVRIRLSTLETDRVYTHSYPLLVLHPNGVKKTGEIHFAVRFTCSSLINMMHMYSKPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFDQICNWRSPITTILIHILFIILVMYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTSRQNDIVRMRYDRLRSVAGRIQTVVGDLATQGERLQSLLSWRDPRATSLFVIFCLVAAIVLYVTPFQVVALLSGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02872 775 Gene3D C2 domain 40 160 IPR035892 -
Pumo3g02872 775 MobiDBLite consensus disorder prediction 1 15 - -
Pumo3g02872 775 MobiDBLite consensus disorder prediction 1 22 - -
Pumo3g02872 775 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 6 775 IPR047259 -
Pumo3g02872 775 SMART C2_3c 364 472 IPR000008 -
Pumo3g02872 775 SMART C2_3c 202 300 IPR000008 -
Pumo3g02872 775 SMART C2_3c 40 136 IPR000008 -
Pumo3g02872 775 Gene3D C2 domain 188 333 IPR035892 -
Pumo3g02872 775 Pfam C2 domain 201 307 IPR000008 -
Pumo3g02872 775 Pfam C2 domain 364 475 IPR000008 -
Pumo3g02872 775 Pfam C2 domain 40 133 IPR000008 -
Pumo3g02872 775 FunFam C2 domain-containing protein 35 179 - -
Pumo3g02872 775 CDD C2C_MCTP_PRT_plant 202 352 IPR047258 -
Pumo3g02872 775 ProSiteProfiles C2 domain profile. 181 305 IPR000008 -
Pumo3g02872 775 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 40 177 IPR035892 -
Pumo3g02872 775 PRINTS C2 domain signature 80 93 IPR000008 -
Pumo3g02872 775 PRINTS C2 domain signature 56 68 IPR000008 -
Pumo3g02872 775 PRINTS C2 domain signature 102 110 IPR000008 -
Pumo3g02872 775 CDD C2D_MCTP_PRT_plant 364 492 IPR047255 -
Pumo3g02872 775 ProSiteProfiles C2 domain profile. 22 142 IPR000008 -
Pumo3g02872 775 ProSiteProfiles C2 domain profile. 346 473 IPR000008 -
Pumo3g02872 775 Gene3D C2 domain 339 496 IPR035892 -
Pumo3g02872 775 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 363 506 IPR035892 -
Pumo3g02872 775 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 354 IPR035892 -
Pumo3g02872 775 Pfam Plant phosphoribosyltransferase C-terminal 620 775 IPR013583 -
Pumo3g02872 775 CDD C2B_MCTP_PRT_plant 40 164 IPR047257 -
Pumo3g02872 775 FunFam C2 domain-containing protein 188 333 - -
Pumo3g02872 775 FunFam C2 domain-containing protein 346 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02872 Pumo-Chr3 50081373 50085114 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02872 1 775 Lipid Metabolism Gene Families AT3G57880 89.677 0.0 1476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02872 - - gmx:100807845 1490.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02872 3 50081373 50085114 Pumo4g02687 4 48131571 48132773 ECH
Pumo3g02872 3 50081373 50085114 Pumo3g02872 3 50081373 50085114 ECH
Pumo5g02635 5 72423869 72426628 Pumo3g02872 3 50081373 50085114 PCT