Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01200 GCAAGAGAATGCTTGACGGCGGAGGCCGCAAAGGCCCTGGACGCAGCCGTATCGGTGGCCCAGCGGCGCAGCCACGCGCAGACCACCTCATTACACGCCGTCTCCGCCCTCCTCTCCCAGCCGTCCTCCGCCTTACGCGACGCATGCGCACGCGTCCGAAGCGCCGTGCACTCGACGCGCCTCCAATTCAGAGCCCTGGAACTCTCCCTCAGCGTGTCACTGGACAGAGCTCCGTCGACATCGACGGGCGGCGACGGCCCGCCGGTGTCGAACTCCCTGATGGCGGCCATCAAGCGGTCACAAGAGGCCCAGCGCCGCCAGCAGGAGAACTTCCACCTGCAGCAGCACTCGCCATCCTCCGTCGCCTCCCGCGCCTCATGCAGCAACAACCTTCCGTTGGCCGGAGCTTCCCCTTTAGTGAATGGGAAAAAGGAGTGGGGAGAGAGCGAAGCAGTTAGGTATGTGGTTAGAGGGATAGGGAAGCTGTTGGAAGTTAGTTATGGGAGGTTATGGTTGATTGGTGCTGCAGCCAGTTACGAGAGGTACATGAAATTTGTTGGGCACTTTCCTTCTATAGAGAAGGATTGGGACTTGCAGCTTCTGCCCATTGTCTCTCTTCCTTCTTCACTCACTTCCACTTCCACTTCCACTTCCACTTCCACTGCTGAATCTTATCTCACTCACACTCAACCCTACAGTTTTGATTTGATTAATTTTATTCTTCTCTCCATTGCCATCAATACGGTGAAAGGACTCCTCATTTCTTCAACTGCTGATCTTCGTCTGCCTAAATTCCTTCCATGGTTGCAGATTTCAGAATTAGGATCAGCAAAAGGATTGAACCTTAAGTTAGAAGATGACGGTGTTGTGCTAAATAGTAGTGAATCTGCAATGCATAAGAACTTGGACAAGAAATACCAGTATCTGCCTAAAAATGTCCTTGGTGCAAATAACTTTCCACCATTTATGGGGTTCCAATGTTCTGACGACAAAAGGAAAGATACAAACAACCCCAGCAACAAATTTACATGTACGCCAAGTGAATACAGCAATATCAATTCGGAAGTGTTTGTTGGTAAGCAAATGGTTTCCACATCACAATCAAGCAGTTCTTTTCCTATGGATTTCAATGCAAAGCAAGAGAAATATACCTCAAAACTTTCAGAGAAGTTTCAGAGAGTGGAAGGTCTTGAGTTAGGTGATCTAGGATCATGCTACACATGTACTTCAGTTGTTTGTGATGGAGCCCAGATGTCTCCCACATCTGTGAAGTCTGTAACCATAGATTTGGGATTAGGAATGTGGTCCTCTCCTACCAGCAATAAACCAGAGAAACCTTCCAATCAATGTACAATGGAGCCTCCAAAGGAATGCTCAAGTTCATTTTCTTTAAAATTTAATGTTGCTAGTGGAAATATCTTGAAAAATGCATCTCAACCTTCTACCTACTTAAGTTTTGACTTCTGCAGACAAGTTGATGCAAGAAATCCCAAAATTCTTTTTGATGTCCTAACTAAGGAGGTCAGCTGGCAAGGTGAAGCCATAAGTGTTATCAGCAAAACAATAGCTGGCAGCCATACAAAAAGGGTAGGAGCAAATCAAAGGAGTGATGTATGGATGAATTTTGTGGGGCCTGATAGGAATGGTAAAAAGAAAATTATGGTTTCTCTAGCTAAGTTCTTGTATGGAAGCCAGGAAAGCTTTATTTTTGTGGATCTAAGTTCTGAAGAAATGGAAGGATGCAATGCGAAATTCAGAGGGAAGACTACTCTTGATTATATTCTTGGTGAGTTTTGCAAGAAACCCTTCTCTGTGGTTTTCCTTGAAAATGTAGACAAGGCTGATGCGTTAGTTCAAACTAGTTTGTCTCAAGCCATCAAGACTGGAAAGCTTACTGACTCACACGGAAGAGAAGTTGGTGTAAAGAATGCAATATTTGTGACTTCTTTCTCTGGTCACCAAGCAAAGGAACCTTCCTACCATTCTGAGGAGAGAATAGTGAAATTAAAAGGGAGGCCTATCAAAATAACAGTTGAACATGTGAGTGGAGAGATCAAAAGCCAAAGTGTTAGTGTAGCCGATCGTTCAATGGAGAACATTCCCATTCTAGATTTAGTAAATAAACGAAAGTTCATTAGCCATAATGAATTGCATGATCAGCACTCATTCTCAGGCATGGCTAAAAGAGCACATACAACATCAACTTGGCATTTAGATTTGAATCGTCCAGCTGAAGAGAATGAACTTCAAGTTCAACAAATAAACGATGGACACTTGGAACGTGCCTCAATTGAGAAAAAAAAACCTTTGGTTGCAAGATTTGTTGATGCAACAGTTGCTTTTAAACCTTTTAATTTTGATGCACTTGCGGATAGAGTGCTGAAAGTTATCACAAGTAACTTCCAGAAAACTATTGGATCAGAGTGTGCATTGCAGATAGAGTCAGAATTCATGGACCAATTGCTTGCAGCAGCATATGCCTCAGACGGAGATAAGGACATAGAAAATTGGGTGGAAGAAGTACTCAGTGGAGGATTTATTGAAGTACAAAAAAGGTACAACCTTACTGCTGCTTCTGTTGTGACACTTGCTACTTGTTCGCATCAAACATCAAGTGTATACCTTCCTCCAAGTATAACAGTGGAT 2646 0.441 ARECLTAEAAKALDAAVSVAQRRSHAQTTSLHAVSALLSQPSSALRDACARVRSAVHSTRLQFRALELSLSVSLDRAPSTSTGGDGPPVSNSLMAAIKRSQEAQRRQQENFHLQQHSPSSVASRASCSNNLPLAGASPLVNGKKEWGESEAVRYVVRGIGKLLEVSYGRLWLIGAAASYERYMKFVGHFPSIEKDWDLQLLPIVSLPSSLTSTSTSTSTSTAESYLTHTQPYSFDLINFILLSIAINTVKGLLISSTADLRLPKFLPWLQISELGSAKGLNLKLEDDGVVLNSSESAMHKNLDKKYQYLPKNVLGANNFPPFMGFQCSDDKRKDTNNPSNKFTCTPSEYSNINSEVFVGKQMVSTSQSSSSFPMDFNAKQEKYTSKLSEKFQRVEGLELGDLGSCYTCTSVVCDGAQMSPTSVKSVTIDLGLGMWSSPTSNKPEKPSNQCTMEPPKECSSSFSLKFNVASGNILKNASQPSTYLSFDFCRQVDARNPKILFDVLTKEVSWQGEAISVISKTIAGSHTKRVGANQRSDVWMNFVGPDRNGKKKIMVSLAKFLYGSQESFIFVDLSSEEMEGCNAKFRGKTTLDYILGEFCKKPFSVVFLENVDKADALVQTSLSQAIKTGKLTDSHGREVGVKNAIFVTSFSGHQAKEPSYHSEERIVKLKGRPIKITVEHVSGEIKSQSVSVADRSMENIPILDLVNKRKFISHNELHDQHSFSGMAKRAHTTSTWHLDLNRPAEENELQVQQINDGHLERASIEKKKPLVARFVDATVAFKPFNFDALADRVLKVITSNFQKTIGSECALQIESEFMDQLLAAAYASDGDKDIENWVEEVLSGGFIEVQKRYNLTAASVVTLATCSHQTSSVYLPPSITVD 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01200 882 SUPERFAMILY Double Clp-N motif 5 111 IPR036628 -
Pste8g01200 882 ProSiteProfiles Clp repeat (R) domain profile. 1 111 IPR004176 -
Pste8g01200 882 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 148 854 - -
Pste8g01200 882 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 497 651 IPR027417 -
Pste8g01200 882 Pfam AAA domain (Cdc48 subfamily) 540 664 IPR003959 GO:0005524|GO:0016887
Pste8g01200 882 MobiDBLite consensus disorder prediction 107 126 - -
Pste8g01200 882 Gene3D - 2 131 IPR036628 -
Pste8g01200 882 Gene3D - 468 691 IPR027417 -
Pste8g01200 882 CDD RecA-like_ClpB_Hsp104-like 498 649 - -
Pste8g01200 882 MobiDBLite consensus disorder prediction 99 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01200 Pste-Chr8 6337946 6345553 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g02202 7 20410396 20416357 Pste8g01200 8 6337946 6345553 ECH
Pste4g02602 4 18349348 18353828 Pste8g01200 8 6337946 6345553 ECH
Pste7g01613 7 14954512 14960890 Pste8g01200 8 6337946 6345553 ECH
Pste8g01674 8 10657300 10662939 Pste8g01200 8 6337946 6345553 ECH
Pste8g01200 8 6337946 6345553 Pste8g01200 8 6337946 6345553 ECH
Pste7g02202 7 20410396 20416357 Pste8g01200 8 6337946 6345553 PCT