Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00894 ATGACTGTGATGACTCCTGCTCCCATTGACGTACGTTCTTTCTCTTTACCCTCACTCTGCAGCTCCCTGTTGCTCATCCCTTTCAATTACTCGCGTGTTTTCAATTTCGCTCCTCCTTTTATGTTTTCTCTCCTTTGCTTGCATGATTTTCTTCCCTCTTCTGTTTCCCTTAATGGTCTCAATTTGATTGTCCTTTTGGTTGGAGGCTTCGGTTGGCCTGGAGTCATGGGGTTTCGTGTTAGGGGTTGTGCTTTTGATCTGCGCCACTTGAATTTGCTTCAATTCCGATGCATTTCCTGCTTCGATTTGGGGGATTTGATTGCCTTTGGTTCTTCGCAGCAGGAGGACGAGGAGATGCTTGTCCCGCACACCAATTTGCCTGAGAATAACCACCAACCCATGGAAGTTGTGCCTGAGCCTGATGCCGCCAACACTGTTGAGAGTCAGCCTGTTGAGGATCCTTCATCGTCAAGATTCACGTGGAAAATTGAAAACTTTTCTAGGATGAATACAAAGAAGCTCTATTCAGAAATATTTGTTGTTGGTGGTTATAAATGGCGGGTACTTATTTTCCCAAAAGGGAACAATGTGGACTATTTATCCATGTATTTGGATGTTGCAGATTCAGCTAGTTTGCCCTATGGCTGGAGTAGATATGCACAGTTTAGCTTGGCAGTTATTAATCAAATCCATAATAAATACTCTGTGAGAAAAGATACGCAGCACCAATTCAATGCTCGAGAAAGTGATTGGGGTTTCACATCCTTCATGCCACTTGGTGAATTGTATGATCCTACCAGAGGGTATCTTGTGAATGACACTCTTGTAGTTGAAGCCGAGGTTCTTGTTCGTAGAATTGTTGATTACTGGACTTATGATTCAAAAAAGGAGACTGGCTATGTTGGACTTAAGAACCAGGGAGCTACATGTTATATGAATTCTCTACTCCAAACTTTGTATCATATTCCTTATTTTCGGAAGGCTGTGTACCATATGCCAACAACAGAGAACGATATGCCCACTGGAAGCATCCCTTTGGCTTTGCAAAGTTTATTCTACAAGCTCCAGTATAGTGACGGCAGTGTTGCAACAAAGGAACTGACCAAATCTTTCGGATGGGATACATATGATTCTTTCATGCAGCATGATGTTCAAGAACTGAACAGAGTCCTCTGTGAAAAACTTGAAGACAAAATGAAGGGAACTGTTGTTGAGGGAACTATACAGAAGTTATTTGAAGGGCATCATATGAACTATATTGAATGCATCAATGTGGACTATAAATCAACTAGAAAGGAGTCATTTTATGACCTTCAGCTTGATGTGAAAGGTTGTCCTGATGTTTATGCTTCCTTTGACAAGTATGTTGAAGTTGAACGGCTTGAAGGGGACAACAAATATCATGCGGAACAATATGGTTTGCAGGATGCTAAGAAGGGTGTTCTTTTCATTGATTTCCCCCCTGTTCTTCAGCTTCAACTGAAAAGATTTGAATATGACTTTATGCGGGATACTATGGTAAAGATCAATGACCGTTATGAGTTCCCCTTGCAACTTGACCTTGATCGTGACAATGGGAAATATTTATCACCTGAGGCTGATAGGAACGTCCGCAATCTTTACACACTTCATAGTGTTTTGGTTCACAGTGGTGGTGTACATGGTGGACATTATTATGCTTTTATTCGGCCAACTCTCTCTGAGCAGTGGTATAAATTTGATGATGAGAGGGTCACTAAAGAAGACACTAAACGGGCATTAGAGGAGCAATATGGTGGCGAGGAAGAGTTACCACAGACAAATCCTGGATTTAACAACACTCCTTTTAAATTCACCAAATATTCAAATGCTTATATGCTGGTGTATATACGTGAAGCTGACAAGGACAAAGTAATATGCAATGTGGATGAGAAAGACATTGCTGAACATTTAAGGGAGAGGTTGAAGAAGGAACAAGAAGAAAAAGAGCACAAAAAGAAAGAAAAGGCAGAGGCTCACCTTTACACTATTATAAAGGTGGCACGAGATGATGACCTTGCAGACCAAATTGGAAAGGATATATATTTTGATCTTGTGGATCATGACAAAGTGAGGAGTTTCCGTGTCCAAAAGCAGACATCTTTTAATCTTTTTAAGGAAGAAGTTACCAAAGAATTTGGCATACCAGTTCAATTCCAGCGCTTTTGGCTATGGGCAAAGCGGCAAAACCATACATATCGTCCAAATCGACCATTGACACCCATGGAGGAAGCACAATCTGTTGGACAATTGAGAGAGGTATCAAACAAGGTTCACAATGCAGAATTGAAATTGTTTTTGGAAGTGGAGCTTGGGATGGATTTACGTCCCATTGCACCACCTGACAAGACAAAGGATGACATATTACTTTTCTTCAAGTTATATGATCCTGAAAAAGAGGAGCTACGTTATGTTGGAAGGCTCTTTGTGAAGAGTTCTGGTAAGCCCTCAGAAATCTTAACGAGGTTAAATAAAATGGCTGGTTATGATCCTGATGAAGAGATTGGTCTATATGAGGAAATTAAGTTTGAGCCAAATGTTATGTGTGAACCTGTTGATAAGAAAGTAACATTTCGAGCAAGCCAGTTAGAAGATGGGGATATTGTATGCTTTCAGAAAGCTTCTGGTTTAGACAGTGAGGAACATGTCCGTTATCCAGATGTGCCCTCATACTTGGAATATGTGCACAATCGCCAGGTTGTTCACTTTCGATCGCTGGATAAACCCAAGGAAGATGACTTCTGCCTGGAGATGTCAAGGCTCTATACATACGATGATGTGGTGGAGAGAGTGGCTCAACAACTTGGTTTGGATGATCCATCCATAATTAGGCTTACTCCTCATAATTGCTACTCTCAACAACCAAAACCTCAGCCTATCAAGTATCGTGGTGTGGAACATTTGTCTGATATGCTGGTTCATTACAACCAAACTTCGGATATATTGTACTATGAAGTACTTGACATCCCTCTGCCAGAATTACAAGGCTTGAAAACTCTGAAAGTTGCATTTCACCATGCTACCAAGGATGAAGTGGTTATTCATACAATCAGACTCCCAAAGCAGAGCACTGTGGGGGATGTCCTTGATGATCTGAAAACAAAGGTGGAATTGTCTGACCCTGAAGCTGAGCTTAGGTTGCTTGAAGTTTTCTATCATAAGATATACAAGGTCTTCCCTCCCAATGAAAAGATCGAAAACATTAATGATCAATACTGGACATTACGTGCAGAGGAGATTCCTGAAGAAGAGAAAAATCTGGGTCCTCATGATCGTCTAATCCATGTTTATCATTTCACTAAAGACACAGCTCAGAACCAAATGCAAATTCAGAACTTTGGGGAACCCTTTTTCTTGGTCATACATGAAGGGGAGACTTTGGCTGAAATTAAAGTACGAATACAGAAGAAACTTCAAGTTCCTGATGACGAGTTTGTCAAGTGGAAATTTGCTTTTTTTTCATTGGGGCGTCCTGAGTACCTTCAGGATTCTGACATTGTATCCAGTCGTTTTCAGAGGAGAGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAGCATACCGACAATGCTCCTAAAAGATCATATGCTGTTAACCAGAATCGCCACACTTTTGAGAAGCCAGTAAAGATTTATAATTAGGAAACTGGTAGTGAAGAGTTCTCGTCTTGCATGGAATGAATTTGGCGTTCTTTACATCTATGGGTTTGTAAAAACAGGGGAAATAGCAAAAGGCTACTCTGTATAGGCCAACTAATGAGATCAGCAATCCAGGTGGTTTCTGCAGGTTTTATATTAGAATTGTTGGTATGTAATTCTTTCTGTCAACGGAGTGACATTGTTCTCAACACTATCTGCCGACCACAGCCCGTTGAGCTTTACTACTTCCAACTCTGTGTGGAAGTTGTTCAAGTTGAGATCATTGATCATGATCACTGCACTGTATCAGTACATAAGATTTTTGGATTAGTGAGTGTATACAGGGTATAGTTGGTTGACTTTTTTTGTTCATCTTGATTGCTTCCAGATTTTGTTCAGTTAGTAGTGTTAATTTAAGTGAGGGCTGCAAAATGGTGTAGCAGAGTTAATGTAATGTTGTAAAAGAGACTCGTCAGCCTCGGTATAACCCTTTAGCATAAAATATTAATATAGTTTCCTGCCGCACCATTTGGTCCATTTTCTGTGGC 4208 0.4066 MTVMTPAPIDVRSFSLPSLCSSLLLIPFNYSRVFNFAPPFMFSLLCLHDFLPSSVSLNGLNLIVLLVGGFGWPGVMGFRVRGCAFDLRHLNLLQFRCISCFDLGDLIAFGSSQQEDEEMLVPHTNLPENNHQPMEVVPEPDAANTVESQPVEDPSSSRFTWKIENFSRMNTKKLYSEIFVVGGYKWRVLIFPKGNNVDYLSMYLDVADSASLPYGWSRYAQFSLAVINQIHNKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPTRGYLVNDTLVVEAEVLVRRIVDYWTYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPTGSIPLALQSLFYKLQYSDGSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCPDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRDNGKYLSPEADRNVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSEQWYKFDDERVTKEDTKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIREADKDKVICNVDEKDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDDDLADQIGKDIYFDLVDHDKVRSFRVQKQTSFNLFKEEVTKEFGIPVQFQRFWLWAKRQNHTYRPNRPLTPMEEAQSVGQLREVSNKVHNAELKLFLEVELGMDLRPIAPPDKTKDDILLFFKLYDPEKEELRYVGRLFVKSSGKPSEILTRLNKMAGYDPDEEIGLYEEIKFEPNVMCEPVDKKVTFRASQLEDGDIVCFQKASGLDSEEHVRYPDVPSYLEYVHNRQVVHFRSLDKPKEDDFCLEMSRLYTYDDVVERVAQQLGLDDPSIIRLTPHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVIHTIRLPKQSTVGDVLDDLKTKVELSDPEAELRLLEVFYHKIYKVFPPNEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKDTAQNQMQIQNFGEPFFLVIHEGETLAEIKVRIQKKLQVPDDEFVKWKFAFFSLGRPEYLQDSDIVSSRFQRRDVYGAWEQYLGLEHTDNAPKRSYAVNQNRHTFEKPVKIYN 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00894 1220 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 154 297 IPR008974 GO:0005515
Pste8g00894 1220 ProSiteProfiles MATH/TRAF domain profile. 156 281 IPR002083 GO:0005515
Pste8g00894 1220 Coils Coil 634 665 - -
Pste8g00894 1220 Gene3D Cysteine proteinases 298 626 - -
Pste8g00894 1220 FunFam Ubiquitin carboxyl-terminal hydrolase 13 904 1001 - -
Pste8g00894 1220 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 541 558 IPR018200 GO:0004843|GO:0006511
Pste8g00894 1220 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 301 625 IPR028889 -
Pste8g00894 1220 SUPERFAMILY Cysteine proteinases 296 653 IPR038765 -
Pste8g00894 1220 CDD MATH 158 281 IPR002083 GO:0005515
Pste8g00894 1220 Pfam Ubiquitin carboxyl-terminal hydrolase 301 622 IPR001394 GO:0004843|GO:0016579
Pste8g00894 1220 Pfam MATH domain 163 282 IPR002083 GO:0005515
Pste8g00894 1220 FunFam Ubiquitin carboxyl-terminal hydrolase 13 298 626 - -
Pste8g00894 1220 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 302 317 IPR018200 GO:0004843|GO:0006511
Pste8g00894 1220 CDD peptidase_C19C 299 625 - -
Pste8g00894 1220 Gene3D - 904 1001 - -
Pste8g00894 1220 FunFam Ubiquitin carboxyl-terminal hydrolase 13 786 903 - -
Pste8g00894 1220 SMART math_3 158 262 IPR002083 GO:0005515
Pste8g00894 1220 SUPERFAMILY TRAF domain-like 155 286 - -
Pste8g00894 1220 Pfam Ubiquitin-specific protease C-terminal 988 1198 IPR029346 -
Pste8g00894 1220 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 726 978 IPR024729 -
Pste8g00894 1220 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 145 627 - -
Pste8g00894 1220 Gene3D - 786 903 - -
Pste8g00894 1220 FunFam Ubiquitin carboxyl-terminal hydrolase 13 154 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00894 Pste-Chr8 4590046 4604240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00894 301 590 Miscellaneous Gene Families AT2G24640 23.529 3.92e-10 62.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00894 8 4590046 4604240 Pste8g00894 8 4590046 4604240 ECH
Pste5g02541 5 17863765 17866265 Pste8g00894 8 4590046 4604240 ECH
Pste4g02781 4 19619936 19621880 Pste8g00894 8 4590046 4604240 ECH