Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02819 AATGAAGCATTCTCATATTTTACCACTAGCATTCTGTATATTTTTCCTTACTCTGTTTTTACTGGTCCAAGCTAGGCATCACTCTCACACAAAGCACAACAAGCACTCACATTCGCATAAATCTTCTAAAACTCCAAAGCATGCACCTCCTAACCCTCCTCACAATGAGAACCATAACAATGTCTCTGGCATCTTTGATGTACGAACATTTGGAGCAATAGGAGATGGAAAAACCGATGACACAGAGTCATTTAAGATGGCATGGGACACTGCCTGCCAAAGTGAATCAGCAGTCAGTGCTATCCTTGTACCACAAGGTTTCTCCTTCCTCGTTCAGTCCACTATCTTCACTGGTCCTTGTCAAGGTGTCTTGGTGTTGAAGGTTCATGGAACTCTCATGCCACCTGATGGACCTGAATCTTGGCCAAAGAACAATAGTAGGCACCAATGGCTGGTCTTTTATAGAATCAATGGGATGACACTGGAAGGAGATGGTTTAATAGATGGAAGAGGAGAAAAATGGTGGGACCTTCCCTGTAAGCCTCACAAGGCCATACGGTTTTTTATGAGTTCCAACTTGACTGTGCAAGGACTTAGGATAAAGAACAGTCCCCAGTTCCATTTCAGATTTGACGGCTGCAAAACGGTCCATATAGAATCAGTCTACATAACAGCTCCAAAACTAAGCCCCAACACTGATGGAATTCACATAGAACATACCAATTACGTGAAAATATATAATTCTGTTATTTCTAATGGTGATGACTGTGTATCGATTGGATCCGGCTGCAATGATGTCGATATTAAGAACATTACTTGTGGACCTGGTCATGGAATTAGCATTGGTAGTCTGGGGTATCAAAATTCTAGAGCCTGTGTTTCAAACATTATGGTGAGAGACTCATTTATAAAAGTTTCAGATAATGGGGTTAGGATCAAGACTTGGCAAGGTGGATCAGGATCAGTATCTGGAGTGACATTCAGCAACATCCACATGGTTAGTGTAAGAAATCCCATCATAATTGACCAGTTCTACTGCCTCACTAAGGAGTGCACGAACAAGACCTCTGCAGTATATGTATCGAATGTTATTTACACAAACATAAAGGGGACTTATGATATAAGGAGCCCTCCTATGCGTTTTGCCTGCAGTGACTCTGTCCCATGCACCAACTTAACTCTCTCCGATATTGAGCTTCTGCCTGCTGAAGGTGATATAGTGAATGATCCTTTCTGTTGGAATGCTTATGGAGATTTGGAGACACTAACCATTCCACCAGTCTCTTGCTTGCAGGAGGGCACTCCTCAGTCCGTGTTAAACTTTGACATAACTCGTTGC 1339 0.4235 MKHSHILPLAFCIFFLTLFLLVQARHHSHTKHNKHSHSHKSSKTPKHAPPNPPHNENHNNVSGIFDVRTFGAIGDGKTDDTESFKMAWDTACQSESAVSAILVPQGFSFLVQSTIFTGPCQGVLVLKVHGTLMPPDGPESWPKNNSRHQWLVFYRINGMTLEGDGLIDGRGEKWWDLPCKPHKAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCKTVHIESVYITAPKLSPNTDGIHIEHTNYVKIYNSVISNGDDCVSIGSGCNDVDIKNITCGPGHGISIGSLGYQNSRACVSNIMVRDSFIKVSDNGVRIKTWQGGSGSVSGVTFSNIHMVSVRNPIIIDQFYCLTKECTNKTSAVYVSNVIYTNIKGTYDIRSPPMRFACSDSVPCTNLTLSDIELLPAEGDIVNDPFCWNAYGDLETLTIPPVSCLQEGTPQSVLNFDITRC 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02819 446 PANTHER - 64 417 - -
Pste5g02819 446 ProSitePatterns Polygalacturonase active site. 270 283 IPR000743 GO:0004650|GO:0005975
Pste5g02819 446 Gene3D - 51 438 IPR012334 -
Pste5g02819 446 MobiDBLite consensus disorder prediction 30 61 - -
Pste5g02819 446 SUPERFAMILY Pectin lyase-like 63 437 IPR011050 -
Pste5g02819 446 FunFam Polygalacturonase At1g48100 family 53 433 - -
Pste5g02819 446 Pfam Glycosyl hydrolases family 28 95 399 IPR000743 GO:0004650|GO:0005975
Pste5g02819 446 SMART pbh1 240 261 IPR006626 -
Pste5g02819 446 SMART pbh1 213 239 IPR006626 -
Pste5g02819 446 SMART pbh1 322 343 IPR006626 -
Pste5g02819 446 SMART pbh1 293 314 IPR006626 -
Pste5g02819 446 SMART pbh1 263 283 IPR006626 -
Pste5g02819 446 MobiDBLite consensus disorder prediction 30 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02819 Pste-Chr5 20915898 20918631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02819 62 446 Glycoside Hydrolase AT1G02460 68.983 0.0 587
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02819 5 20915898 20918631 Pste5g02819 5 20915898 20918631 ECH
Pste5g02819 5 20915898 20918631 Pste4g01475 4 10981189 10983735 ECH
Pste2g02967 2 29593125 29596093 Pste5g02819 5 20915898 20918631 ECH
Pste5g02819 5 20915898 20918631 Pste4g01475 4 10981189 10983735 PCT