Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01475 CTCAAAATTAAACTTGTTGCAACTTGTGCTCCTAGTAGTCACTCGTACAAGGAAGGTAGAACCACCGGTTTCTTTCAATTTCCCAAAACACAGGGTCCCCAATTAGTCCAAAATTCGAGGCTTCATTTCTTTCATCTAGTTGCTGACAGCCACAAAGCCAATTGGAATCTCTAGTTTTCAAAGCTGTATCTTAAACTTTTCACTTCTTTTTTAACTCCAGTACTAGAAAATACTCGCAATGAGGCATTCTCTTATTTTGCCACTAGTATTCTCCTTATATTTTCTTACTTTATTTCTTCCCACCCAAGCTAGGCACCATTACCATAAAAAACACAAGCACTCATATTATCAAAATGCACATGAAATTTCCCCATCTCCTACTCCACTTTCTGGACCTTCTAGCGCTCCTGATGAAGCTCCTAGCCCCAGTCCCGTTGATAACGAAAACTACCATAATGCACCTGAAATTTCACCATCTCCTGCTCCATATTTTGCACCTTCTACCACTCCTTCTCCTAGCCCCTCTGTTAACCAGAGTTACCACAATGCATCTAGTAACTTATTTGATGTACGAACATTTGGGGCCATTGGAGATGGAATAACTGATGACACAGAGTCATTCAAGATGGCGTGGGACACTGCCTGCCAAAGTGAATTAGCAGTTAAAGTTATCCTTGTTCCCCAAAGTTTCTCCTTTATGATTCAATCTACTATTTTCACAGGTCCTTGTCGAGGAGACTTGGTACTAAAGGTTGATGGAACTCTCATGCCACCTGATGGACCTGAATCTTGGCCAAAGAGCAACAGTAAGCGTCAATGGCTTGTCTTTTATAGAATCAATGGGATGTCACTTGAAGGAAGTGGTTTAATAGATGGGAAAGGAGCAAAATGGTGGGACCTTCCTTGTAAGCCTCATAAGGGACCTCATGGGAAAACATCTCCGGAACCTTGCGACAGCCCAGTTGCCATAAGGTTTTTCATGAGTTCCAACTTGACAGTACAAGGACTTAGGATCAAGAACAGCCCCCAATTCCACTTCAGATTTGATGGCTGTCAAAGTGTCCACGTGGAATCACTATACATAACAGCGCCAGCACTAAGCCCCAACACTGATGGAATACACATAGAAAATACCAATGACGTGAAGATATACAATTCGGTCATTTCTAATGGTGATGACTGCGTGTCGATTGGAGCCGGTTGCCATGATGTTGATATAAAGAACATCACATGTGGACCTGGTCATGGTATAAGCATTGGTAGTCTGGGAAAACAGAACTCTAGAGCCTGTGTTTCAAATATTACGGTGAGGGACTCAGTTATAAAAGTGTCAGATAATGGGGTTAGAATCAAGACATGGCAAGGTGGAGCAGGATCAGTATCAGGAGTGACATTCAGTAATATTCACATGGATACTGTAAGGAACCCCATTATAATTGACCAGTTTTACTGCCTCTCTAAGGATTGCGCCAACAAGACCTCCGCAGTGTTTATAACCAATATAGCTTACACAAACATAAAGGGAACGTATGATATAAGGCATCCACCTATGCATTTTGCTTGCAGTGACTCTGTGCCATGCACCAACTTGACTCTCTCAGATATTGAGCTTCTTCCTGCTCAAGGAGACATAGTGCTTGATCCTTTCTGCTGGAGTGCCTATGGAAATTCTGAGACACTAACCATTCCTCCAGTCTCTTGCTTGCTGGAAGGCCTTCCTCAGTCCATTTCAGGCAATGACATATACCATTGCTAATCCACTATTTTTCGTGTCAAAAACAAAATTGTCTGTATGTATATGCATAATTAATAGGGAAGTAATTAAGGGGTATAGTCTATGATCTTGACTCTTGAGTTGAGTCTTATGTTGTGATTGCCGAGGAGTTGTGTTTTAGATGCTCCTCCCAACTAGTTAACTACATATCTCCTATAGTTATGTCAGGTTTGAAATGGAAGTTTGGC 1962 0.4174 MRHSLILPLVFSLYFLTLFLPTQARHHYHKKHKHSYYQNAHEISPSPTPLSGPSSAPDEAPSPSPVDNENYHNAPEISPSPAPYFAPSTTPSPSPSVNQSYHNASSNLFDVRTFGAIGDGITDDTESFKMAWDTACQSELAVKVILVPQSFSFMIQSTIFTGPCRGDLVLKVDGTLMPPDGPESWPKSNSKRQWLVFYRINGMSLEGSGLIDGKGAKWWDLPCKPHKGPHGKTSPEPCDSPVAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCQSVHVESLYITAPALSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGAGCHDVDIKNITCGPGHGISIGSLGKQNSRACVSNITVRDSVIKVSDNGVRIKTWQGGAGSVSGVTFSNIHMDTVRNPIIIDQFYCLSKDCANKTSAVFITNIAYTNIKGTYDIRHPPMHFACSDSVPCTNLTLSDIELLPAQGDIVLDPFCWSAYGNSETLTIPPVSCLLEGLPQSISGNDIYHC 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01475 505 Gene3D - 93 490 IPR012334 -
Pste4g01475 505 Pfam Glycosyl hydrolases family 28 140 458 IPR000743 GO:0004650|GO:0005975
Pste4g01475 505 SMART pbh1 352 373 IPR006626 -
Pste4g01475 505 SMART pbh1 272 298 IPR006626 -
Pste4g01475 505 SMART pbh1 381 402 IPR006626 -
Pste4g01475 505 SMART pbh1 299 320 IPR006626 -
Pste4g01475 505 SMART pbh1 322 342 IPR006626 -
Pste4g01475 505 ProSitePatterns Polygalacturonase active site. 329 342 IPR000743 GO:0004650|GO:0005975
Pste4g01475 505 MobiDBLite consensus disorder prediction 31 101 - -
Pste4g01475 505 FunFam Polygalacturonase At1g48100 family 97 492 - -
Pste4g01475 505 PANTHER - 107 477 - -
Pste4g01475 505 SUPERFAMILY Pectin lyase-like 105 494 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01475 Pste-Chr4 10981189 10983735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01475 108 505 Glycoside Hydrolase AT1G02460 72.569 0.0 622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01475 4 10981189 10983735 Pste4g01475 4 10981189 10983735 ECH
Pste5g02819 5 20915898 20918631 Pste4g01475 4 10981189 10983735 ECH
Pste2g02967 2 29593125 29596093 Pste4g01475 4 10981189 10983735 ECH
Pste5g02819 5 20915898 20918631 Pste4g01475 4 10981189 10983735 PCT