Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02967 ATCTGCTTCCAACCCTCTAGAAGTTTGTTTGATCTTCTCCATTTATCCTTGTCAATATAACATATTTGAAACAGAGCTTTGGTTTTCTCTATCAATAGATATCATACATTGGTGGAGACATTGTTAGTTTAGTGTCAAAAACTGAGAATTGAAGCTGAGTAGCTGACAATGAGTCTCAGTCGGTGGTCTTTTATCCTATGGACTACCATGATTCTTTTTATCCATAATTTGGATAATGTGGAAGGAAGATACCACAATCACAAAAGGCAGAAGAAAAATTCCCCTGCTCCAAAGCCACCTGCCGAGTCCCCTACACCAGAGGACCCTCCTTCACCCCCTTCCAGTTCCCCAACCCCAAATGTTCCCTCTGACCCTTCTCCAAATGATCCCGGGGACTCCCCTTCAGGCTGCATTTTCGATGTGAGATCCTTTGGTGCACTTGGAGATGGTTCAGCTGATGACACAGAAGCATTTGTGGCAGCATGGAAAGCCGCTTGTGCGGTAGAGTCGGGGGTTGTTCTTGTTCCAGAAGATTACTGTTTCAAGATCACTTCAACTATCTTTACAGGTCCATGCAAGCCAGGATTAGTATTTCAAGTGGATGGTACTCTAATGGCACCTGATGGACCAGAATCTTGGCCCAAGGAAGATAGCCACAGTCAATGGCTCGTGTTCTATCGACTTGATCAAATCACTCTTACTGGGAAAGGAACCATAGAAGGCAACGGGGAACAGTGGTGGGATCTTCCTTGCAAACCTCACAGGGGTCCCGATGGAAAAACTGTATCAGGACCATGTGATAGCCCTACGATGATACGGTTCTTCATGAGCTCCAATATTGTGCTGAGTGGGGTGAAAATCCAAAATAGTCCTATGTTCCACGTGAAATTCGATGGTTGCCAGGGAGTACTGATCGATAAGTTGTCAATTTCTTCGCCTAAACTCAGCCCCAATACTGATGGAATCCACTTAGGAAACACTAGGGGTGTTGGGGTATATAACTCCATGATAAGCAATGGTGATGATTGCATTTCGATTGGACCCGGGTGCTCAGATGTGGACATAGAGGGTGTAACTTGTGCTCCTACCCACGGTATTAGCATTGGAAGCCTTGGAGTGCACAACTCCCAGGCATGTGTCTCTAACTTAACTGTTCGCAACACCATCATAAGGGAGTCAGACAATGGCCTGAGGATCAAGACATGGCAAGGTGGAACGGGATCAGTGAGTGGCCTAAGATTTGAAAACATCCAAATGGAGAATGTGAGGAACTGCATCATCATTGATCAGTACTACTGCTTGTCCAAGGAGTGCCTCAACCAAACCTCAGCTGTGCATGTAAACGATGTGACATATAGGAACATAAAGGGTACTTATGATGTGAGAACCCCTCCTATACACTTTGCTTGCAGTGACACTGTGGCTTGCACAAACATAACACTCTCTGAGATTGAGCTTTTGCCATACGAAGGAGAGTTACTAGATGACCCTTTTTGCTGGAATGCTTATGGAACTCAAGAGACCATGACTATTCCTCCACTTGATTGCTTAAGAGAAGGGGAACCTGATACAGTTGCGGAGCTATCCGCATATGATTGTAGGAGTTAGCATGTCACATTAAATTGTGGTGCTGATATAGTGATATGGGAATGGGAGGTATATCATATATCACATAGTAAACATATAGAGCCATTATGTGGGTTGTCATTGTGGTCTTTGTTTTTGTTACTTACAATTCAGGATTCGTCCCTATTTGGGTTTTCCCCTTGTGTGTGATGAGTTCCAGATATAGAATTTAATCTCTTTTTTGGGTCCTGCATTGTAATAGCTTGATTGGCCATTTATATATATATATATATCATAGCTTTTAAATATCAGCTTTGATTTCATTTCAAACGATTTTAA 1905 0.432 MSLSRWSFILWTTMILFIHNLDNVEGRYHNHKRQKKNSPAPKPPAESPTPEDPPSPPSSSPTPNVPSDPSPNDPGDSPSGCIFDVRSFGALGDGSADDTEAFVAAWKAACAVESGVVLVPEDYCFKITSTIFTGPCKPGLVFQVDGTLMAPDGPESWPKEDSHSQWLVFYRLDQITLTGKGTIEGNGEQWWDLPCKPHRGPDGKTVSGPCDSPTMIRFFMSSNIVLSGVKIQNSPMFHVKFDGCQGVLIDKLSISSPKLSPNTDGIHLGNTRGVGVYNSMISNGDDCISIGPGCSDVDIEGVTCAPTHGISIGSLGVHNSQACVSNLTVRNTIIRESDNGLRIKTWQGGTGSVSGLRFENIQMENVRNCIIIDQYYCLSKECLNQTSAVHVNDVTYRNIKGTYDVRTPPIHFACSDTVACTNITLSEIELLPYEGELLDDPFCWNAYGTQETMTIPPLDCLREGEPDTVAELSAYDCRS 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02967 479 PANTHER - 82 449 - -
Pste2g02967 479 Pfam Glycosyl hydrolases family 28 117 430 IPR000743 GO:0004650|GO:0005975
Pste2g02967 479 MobiDBLite consensus disorder prediction 41 73 - -
Pste2g02967 479 FunFam Polygalacturonase At1g48100 family 71 464 - -
Pste2g02967 479 MobiDBLite consensus disorder prediction 29 79 - -
Pste2g02967 479 SUPERFAMILY Pectin lyase-like 81 476 IPR011050 -
Pste2g02967 479 Gene3D - 75 468 IPR012334 -
Pste2g02967 479 SMART pbh1 294 314 IPR006626 -
Pste2g02967 479 SMART pbh1 244 270 IPR006626 -
Pste2g02967 479 SMART pbh1 324 345 IPR006626 -
Pste2g02967 479 SMART pbh1 271 292 IPR006626 -
Pste2g02967 479 SMART pbh1 353 374 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02967 Pste-Chr2 29593125 29596093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02967 3 476 Glycoside Hydrolase AT1G48100 71.308 0.0 681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02967 2 29593125 29596093 Pste2g02967 2 29593125 29596093 ECH
Pste2g02967 2 29593125 29596093 Pste5g02819 5 20915898 20918631 ECH
Pste2g02967 2 29593125 29596093 Pste4g01475 4 10981189 10983735 ECH