Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02084 TTACACACACCACCAAATAAATGAGAGGTGTTGCCCCATTGCCCATTGCACTTTCTTACACCGTACCCTTCTTTCCCTAACTCTCTCTCTCTCTCTCTCTCCCCGCTTCTTTTGCTCTTTCCCTTCCTTCATACGTTCCTTTCACTCTACTTTTTGACGCACACGTGCCGCATTCATCAGAGCAAGGAAGAATGAGTTCATCCTCATCTCATAGCAGTGGCTATGATCTCTCTTTCAAGATCTTGTTGATCGGAGATTCCGGGGTTGGAAAAAGTAGCCTACTTGTCAGCTTTATCTCTACTTCTGTTGAGGATCTTTCCCCCACCATTGGTGTTGATTTTAAGATCAAAACGCTGACAGTGGGTGGGAAGAGATTGAAATTAACGATTTGGGATACTGCTGGGCAGGAAAGGTTCAGGACTCTAAACAGTTCTTATTATAGAAAAGCACAAGGAATCATTCTTGTTTATGATGTCACAAGAAGAGAAACCTTTACGAACTTATCAGAAGTGTGGTCTAAGGAAGTGGAGCTCTACTCAACTAATAAGGATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAAAGATACTGAAAGGGCTGTGAGCAGAGAAGAAGGTTTAGCTCTTGCTGAAGAATTGGGGTGTTTGCTTCTTGAATGTAGTGCTAAAACAAGGGAAAATGTGGAGCAGTGTTTTGAGGAACTCGCTCTAAAGATAATGGAAGCTCCTAGTCTTTTGGAGGAAGGATCAACAGCAGTAAAAAGGAGTGTTTTAAAACCAAAACAAGAATCTCAAGCGACCCAAAATGGTGGTTGTTGCTCTTAAAATGATACATTGTGGCGTTGACGCTGAGTCTTACCTAGTACATCTTGGACAAATCTTGTATATGTAAGCTTCTTCCCTAGTTTCTTAATTCTTACTGCTGCCATTGGCTTTTGGTTGCTTAATTACTTGTATTACCGGAATGGAGAAATTGGCAACAATGGCTTCTATTAGCTTGTGTAAATTTGTTTTCCTGTGAATGACTATCATTTATGTGTTGCTTCCAAGTCCCAAGTCAATCCTGATACTACAACTGCA 1082 0.4094 MSSSSSHSSGYDLSFKILLIGDSGVGKSSLLVSFISTSVEDLSPTIGVDFKIKTLTVGGKRLKLTIWDTAGQERFRTLNSSYYRKAQGIILVYDVTRRETFTNLSEVWSKEVELYSTNKDCVKMLVGNKVDKDTERAVSREEGLALAEELGCLLLECSAKTRENVEQCFEELALKIMEAPSLLEEGSTAVKRSVLKPKQESQATQNGGCCS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02084 211 ProSiteProfiles small GTPase Rab1 family profile. 10 211 - -
Pste5g02084 211 PRINTS Transforming protein P21 ras signature 154 176 - -
Pste5g02084 211 PRINTS Transforming protein P21 ras signature 119 132 - -
Pste5g02084 211 PRINTS Transforming protein P21 ras signature 55 77 - -
Pste5g02084 211 PRINTS Transforming protein P21 ras signature 15 36 - -
Pste5g02084 211 PRINTS Transforming protein P21 ras signature 37 53 - -
Pste5g02084 211 ProSiteProfiles small GTPase Rho family profile. 8 179 - -
Pste5g02084 211 Pfam Ras family 16 177 IPR001806 GO:0003924|GO:0005525
Pste5g02084 211 SMART arf_sub_2 1 180 - -
Pste5g02084 211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 188 IPR027417 -
Pste5g02084 211 SMART ras_sub_4 12 179 - -
Pste5g02084 211 FunFam Ras-related protein RABC1 8 210 - -
Pste5g02084 211 ProSiteProfiles small GTPase Arf family profile. 8 177 - -
Pste5g02084 211 NCBIfam small GTP-binding protein domain 15 171 IPR005225 GO:0005525
Pste5g02084 211 SMART rab_sub_5 15 179 - -
Pste5g02084 211 CDD Rab18 15 176 - -
Pste5g02084 211 Gene3D - 8 210 IPR027417 -
Pste5g02084 211 ProSiteProfiles small GTPase Ras family profile. 6 211 IPR001806 GO:0003924|GO:0005525
Pste5g02084 211 SMART ran_sub_2 20 210 - -
Pste5g02084 211 PANTHER RAS-RELATED PROTEIN RAB 14 192 - -
Pste5g02084 211 SMART rho_sub_3 17 180 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02084 Pste-Chr5 13438596 13442067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02084 9 203 EF-hand Containing Proteins AT5G27540 27.861 2.70e-12 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02084 5 13438596 13442067 Pste5g02084 5 13438596 13442067 ECH
Pste5g02084 5 13438596 13442067 Pste4g03271 4 24427570 24433144 ECH
Pste5g02084 5 13438596 13442067 Pste4g02179 4 15826750 15830400 PCT