Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g03271 CTCTCAACCGCTTCGACTACCTCTTCTCTTTCTCAATTCTCCACCCTTTTTCTGAAAGGGAGAGATAATCATGATTCACGTTTTTGTAAGCTGAATAAAACAAACAAAACATGGGTTCTCCTTCTAGAGTTGGGAGTAGCAGCTACGATTACTCCTTTAAGGTTTTGTTGATTGGTGATTCTGGTGTTGGCAAGAGTAGTCTTCTTCTCAGCTTCATCTCCAACTCTAACTCCATCCATCACCTATCCCCCACCATTGGTGTGGATTTCAAGATAAAGCTTTTTACAGTTGGTGGTAAAAGATTGAAGCTCACAATTTGGGACACAGCTGGACAAGAGAGATTTGGAACAGTAATAAGTTCTTATTACAGAGGTGCACATGGAATCGTTCTTGTCTATGATGTTACTCGCCGTGAGACATTTACAAACCTCATCGATATATGGGCAAAAGAAGTTGAGCTTTATTCCACTAATCATGATAGTATCAAAATTCTTGTTGGCAATAAGGTGGATAAGGAGAGTGAAAGAGCTGTAAGCAAAGAAGAGGGTATGGCTCTTGCGCAGCAACATAGATGCTTGTTCCTAGAGTGTAGTGCTAAAACTAGAGAAAATGTTCAGCAATGCTTTAATGATCTCACATTAAAGATTTTAGATGTGCCAAGTTTAAGGGAAAAGGGATCTGTTGCTGTGAAAAGACAAAATCAAAAACACAAATACGAGACATCTCAAAACGGTGGTTGCTGTTCTCAGTAAATATGTTGCAACATGAATGTGCAATAGATTTTACATTAGGGATACCATACTTACTAGCAGGTCTTTGTATCATATGTATCACAGTCAGATAGTTTGGATGATCATGTGGTCCAAAATATTTTTTCCAGTCTATTTCCATAACTTGCACAAGAGGATGCTTGAGAAGGATATGTTGTCCTCTCATTTCATTATCTTTTGGAGATACAGCATAGCAGATTATATAGTAGCCAAGATGATCACAAAGCTTTCAATATATTGTGCTTTTGTCTTCTGTTATAGTTTTGGAAACACCTACGGTATTGTACATCTTGTGTAAATATACCTCTTCC 1081 0.3793 MGSPSRVGSSSYDYSFKVLLIGDSGVGKSSLLLSFISNSNSIHHLSPTIGVDFKIKLFTVGGKRLKLTIWDTAGQERFGTVISSYYRGAHGIVLVYDVTRRETFTNLIDIWAKEVELYSTNHDSIKILVGNKVDKESERAVSKEEGMALAQQHRCLFLECSAKTRENVQQCFNDLTLKILDVPSLREKGSVAVKRQNQKHKYETSQNGGCCSQ 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g03271 213 CDD Rab18 16 179 - -
Pste4g03271 213 SMART rab_sub_5 16 182 - -
Pste4g03271 213 SMART ran_sub_2 21 212 - -
Pste4g03271 213 SMART ras_sub_4 13 182 - -
Pste4g03271 213 ProSiteProfiles small GTPase Ras family profile. 3 213 IPR001806 GO:0003924|GO:0005525
Pste4g03271 213 Gene3D - 9 211 IPR027417 -
Pste4g03271 213 ProSiteProfiles small GTPase Rho family profile. 9 180 - -
Pste4g03271 213 PANTHER RAS-RELATED PROTEIN RAB 15 196 - -
Pste4g03271 213 SMART rho_sub_3 18 182 IPR001806 GO:0003924|GO:0005525
Pste4g03271 213 FunFam Ras-related protein RABC1 9 211 - -
Pste4g03271 213 PRINTS Transforming protein P21 ras signature 16 37 - -
Pste4g03271 213 PRINTS Transforming protein P21 ras signature 157 179 - -
Pste4g03271 213 PRINTS Transforming protein P21 ras signature 122 135 - -
Pste4g03271 213 PRINTS Transforming protein P21 ras signature 58 80 - -
Pste4g03271 213 PRINTS Transforming protein P21 ras signature 40 56 - -
Pste4g03271 213 ProSiteProfiles small GTPase Rab1 family profile. 11 213 - -
Pste4g03271 213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 190 IPR027417 -
Pste4g03271 213 Pfam Ras family 17 180 IPR001806 GO:0003924|GO:0005525
Pste4g03271 213 NCBIfam small GTP-binding protein domain 14 173 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g03271 Pste-Chr4 24427570 24433144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g03271 15 172 EF-hand Containing Proteins AT5G27540 29.697 1.45e-11 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02084 5 13438596 13442067 Pste4g03271 4 24427570 24433144 ECH
Pste4g03271 4 24427570 24433144 Pste4g03271 4 24427570 24433144 ECH