Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02179 CCTTTCATTGTACTTTTCACTCAGAGAGAGATACAAATAGACATAGGAACACTTTTTTGAGAAGGACTTCATTTCATTGCCATCATCATTCACGGAGAGCAGAGAATGAGTTCTTCTTCTGGTCAGAGCAGTGGCTATGATCTCTCCTTCAAGATCTTGTTGATCGGTGATTCTGCTGTGGGAAAAAGTAGCCTCCTTGTTAGCTTCATCTCCAATTCTGTTGAACATATTGCCCCCACAATTGGTGTTGATTTTAAGATCAAGGTGCTCACTGTAGGTGGGAAGAGATTGAAACTAACTATTTGGGACACTGCTGGGCAGGAAAGGTTCAGAACATTAACTAGTTCTTACTATAGAGGAGCACAAGGAGTCATTCTTGTTTATGATGTAACGAGAAGAGATACCTTCACAAACTTATCAGAAGTATGGTCTAAAGAAGTGGAACTCTATTCAACCAACCAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAGATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTAGCCGAGGAGTTGGGGTGTTTGTTTTTTGAATGCAGTGCCAAAACTCGAGAAAATGTGGAGCGATGCTTCGAGGAACTTGCATTAAAGATAATGGAAGTTCCTAGTCTTTTGGAAGGACAAACAGCGGTGAAAAGGAATATTTTAAAACAACAGGAACCCCAAACATCCGAATTTGGTGGTTGTTGCTCGTAATTGTTGCAATGTGGACATTACATTTGAGTTATAACTAGTCAATCTTGGTTTCGTCCTTCTGATCCCTGTATATGTAAAGCCTCTTCGTAATTTCCATTGGTGTCTTACTCTTTGCATAATCAGTTGTGTACCAATACTAATGGGCAATTGGCAACAATAGTTCCTATTACCTTTGTGTAATTTTCCGTGCATTCTGTTATTGTTTCTTGCCTATCCAAATCACTAAAGCCTTTTGCAAGTGTAATAACGAATATATATTATATTACACCAGTCATATTTGCA 1017 0.3894 MSSSSGQSSGYDLSFKILLIGDSAVGKSSLLVSFISNSVEHIAPTIGVDFKIKVLTVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLSEVWSKEVELYSTNQNCVKMLVGNKVDRDSERVVSKEEGLALAEELGCLFFECSAKTRENVERCFEELALKIMEVPSLLEGQTAVKRNILKQQEPQTSEFGGCCS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02179 209 Gene3D - 5 204 IPR027417 -
Pste4g02179 209 ProSiteProfiles small GTPase Ras family profile. 6 209 IPR001806 GO:0003924|GO:0005525
Pste4g02179 209 ProSiteProfiles small GTPase Arf family profile. 8 177 - -
Pste4g02179 209 SMART rho_sub_3 17 179 IPR001806 GO:0003924|GO:0005525
Pste4g02179 209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 185 IPR027417 -
Pste4g02179 209 FunFam Ras-related protein RABC1 8 208 - -
Pste4g02179 209 Pfam Ras family 16 177 IPR001806 GO:0003924|GO:0005525
Pste4g02179 209 SMART rab_sub_5 15 179 - -
Pste4g02179 209 CDD Rab18 15 176 - -
Pste4g02179 209 PRINTS Transforming protein P21 ras signature 154 176 - -
Pste4g02179 209 PRINTS Transforming protein P21 ras signature 37 53 - -
Pste4g02179 209 PRINTS Transforming protein P21 ras signature 119 132 - -
Pste4g02179 209 PRINTS Transforming protein P21 ras signature 55 77 - -
Pste4g02179 209 PRINTS Transforming protein P21 ras signature 15 36 - -
Pste4g02179 209 SMART arf_sub_2 5 180 - -
Pste4g02179 209 SMART ran_sub_2 20 204 - -
Pste4g02179 209 SMART ras_sub_4 12 179 - -
Pste4g02179 209 NCBIfam small GTP-binding protein domain 15 171 IPR005225 GO:0005525
Pste4g02179 209 ProSiteProfiles small GTPase Rab1 family profile. 10 209 - -
Pste4g02179 209 PANTHER RAS-RELATED PROTEIN RAB 14 191 - -
Pste4g02179 209 ProSiteProfiles small GTPase Rho family profile. 8 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02179 Pste-Chr4 15826750 15830400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02179 9 169 EF-hand Containing Proteins AT5G27540 27.545 1.18e-10 58.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02179 4 15826750 15830400 Pste4g02179 4 15826750 15830400 ECH
Pste5g02084 5 13438596 13442067 Pste4g02179 4 15826750 15830400 PCT