Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01954 AAAACTAGAAAAAAAAAAAGAAGAGAAAAGAACCCTTCGTTTCTTTGTTTTACAACGTTATCTATCTATAAGCAAATGCAATTTTTTCCTCCGTAGAAACTGGAAATTAGACACGTAGTCGTAAACATAGTGAAGGGAACATATTATTCGGTGTGTCTAAAGCCATGTTTTCTTCTTCTCCACCGTTTCCTTCATCTTCTTCGCCTTCGGTTACGATGCTTCATGAGCACGCTGCTCCCGCAGTTGCCTCTTGGTCTTCTAGTTCAGCAGCTCAGCATTTTCCTACTTCGGTTCTTTTACAAGAGCAGCGTGATGATTATAGGCCCCTACTTCACGTGTATAATAAGGAGGCAACATTAAATACAAGGCAGATGGATATAATGCCGGTTCATGAAAAAGGTAACATGGGCAATGCTGATCAGTTAGTGCATGACTTTGTGCAGCAGTTGCATCTCCGGTCTCATTTACAGAACTTATTAACTTGTTCTCATACAAAGGGAATTTCTGCTTCCTTGACTCTCCAACCTATTGATTTTGATTCAGAGAGGCCTGCAGATGGTCTGCCAGGGAATGCGGTTTCTCTTGCTCAGCAAGCTTTATCAGCCTCAAAGGAAGCAGCTTCAACAGTTGGAGAGATGCAATTAACTGAAGATGATGATCCACTCTGTTTGAGTTTGGCCTCCACAAGTTTGGATGACACTTCGCACAAAAAGAATAAAATTGTGAGGTCAACACGGACTATGGAAAGACGATCCAAACAGAGAAAAGTATCAAAGTCAAAATTTCTTGATGAAGAAAGTTACCTTGAAAGAAAGTCTGATGTACAGAGAAGGTTAGATTTGGAAAAGAAGTTAAAAGAAGGGTTTGATCAAAATGACCCCTTGCGATTGTTCCTGTCAGGCCCTGAAACAAGGCAACTTTTGACTCGTGAAGAAGAGTATCAATTGATTACTCAAATACAGGACTTATCGAGATTGGAAGAAGTAAAGATCAGGCTTCAATCTCAGTTAACACGGGAACCAACTTTGGCAGAATGGGCGGATGTTGTGGGCCTTAGTTGTTCTGCTCTGCAGAGACAGCTTCATTGTGGTAACAGAAGCAAAGAAAAACTGTTTCATGCCAATTTACGTATGGTAGTTCACATTGCTAAACATTATCGGGGACGTGGTCTCAGCCTTCAGGACTTATTTCAGGAGGGAAGTACGGGTCTTATGAAGAGCATTGAAAAATTTAAACCTGAAGCTGGTTGCCGGTTTGGTACTTATGCATACTGGTGGATAAGGCATTCAATAAGAAAGGCCATATTTCTACATTCCAGGACAATTCGTTTGCCGGAGAATTTATATACTCTTCTGGGCAAGGTCATAGAAGCAAAGAAATCATTCATTCAGGAAGGAAATCTTCGCCCCACCAATGAAGAATTAGCTAGAAGAGTAGGAATTACTGTAGACAAGTTGGAAAATTTGCTATTTGCTTCGAGAATTCCAATTTCGATGCAGAAAACTGTGTGGACAGATCAAGATACAATTTTCCAGGAGATTACTGCTGACTCTGCAATTGAGATCCCAGATGTGACTGTTTCAAAACAGCTAATGAGGAGGCATGTGCAAGACCTTCTGAATATCTTAAGCCCAAAAGAAAAGAGCATAATCAGGCTAAGATTTGGTATTGAGGATGGCAAGGAGAAAACGTTGTCAGATATTGGCAAGGTTTTTGGTTTGACTAAGGAGAGGGTCCGACAGTTGGAGAGCCGAGCATTGTCCAAGCTCAAGCAGTGTCTTGAAAGTCAAGGACTTGATGCATACACAGACTTGCTTGTATAGACGAGTAGACACCAAGGTTATGCAGTTCATCTTTCTTGGCTGTGACATTTTTTCTGGCCAAGTGCAAAAGCAATAGCTAGATCAAGCTTTTGAAGAGAAAGCTGACACTGGGCCATGGTAATTGAGATGAATTGGGTAGCTATTTGGGGATAAAGAAAATTCAAGATCCAAAAAAGCTTCTGCAGTTTATAAAAATTAAGAAGCCAAATTAATGCGAATATATTTTGATTTAAACTCTTGTAATATATTAATGTTGTCTCATTTGATTTTTTTATTTGCTTATATATAAAGAGATATCCACAT 2126 0.3979 MFSSSPPFPSSSSPSVTMLHEHAAPAVASWSSSSAAQHFPTSVLLQEQRDDYRPLLHVYNKEATLNTRQMDIMPVHEKGNMGNADQLVHDFVQQLHLRSHLQNLLTCSHTKGISASLTLQPIDFDSERPADGLPGNAVSLAQQALSASKEAASTVGEMQLTEDDDPLCLSLASTSLDDTSHKKNKIVRSTRTMERRSKQRKVSKSKFLDEESYLERKSDVQRRLDLEKKLKEGFDQNDPLRLFLSGPETRQLLTREEEYQLITQIQDLSRLEEVKIRLQSQLTREPTLAEWADVVGLSCSALQRQLHCGNRSKEKLFHANLRMVVHIAKHYRGRGLSLQDLFQEGSTGLMKSIEKFKPEAGCRFGTYAYWWIRHSIRKAIFLHSRTIRLPENLYTLLGKVIEAKKSFIQEGNLRPTNEELARRVGITVDKLENLLFASRIPISMQKTVWTDQDTIFQEITADSAIEIPDVTVSKQLMRRHVQDLLNILSPKEKSIIRLRFGIEDGKEKTLSDIGKVFGLTKERVRQLESRALSKLKQCLESQGLDAYTDLLV 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01954 552 ProSitePatterns Sigma-70 factors family signature 2. 509 535 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pste5g01954 552 Gene3D - 471 551 IPR036388 -
Pste5g01954 552 Pfam Sigma-70, region 4 484 537 IPR007630 GO:0003700|GO:0006352|GO:0006355
Pste5g01954 552 Pfam Sigma-70 region 3 397 468 IPR007624 GO:0003700|GO:0006352|GO:0006355
Pste5g01954 552 Pfam Sigma-70 region 2 316 380 IPR007627 GO:0003700|GO:0006352|GO:0006355
Pste5g01954 552 NCBIfam sigma-70 family RNA polymerase sigma factor 314 539 IPR014284 GO:0003700|GO:0006352|GO:0006355
Pste5g01954 552 Gene3D - 233 385 - -
Pste5g01954 552 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 236 386 IPR013325 GO:0003700|GO:0006352|GO:0006355
Pste5g01954 552 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 389 462 IPR013324 -
Pste5g01954 552 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 137 548 - -
Pste5g01954 552 CDD Sigma70_r4 478 536 - -
Pste5g01954 552 PRINTS Major sigma-70 factor signature 524 535 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pste5g01954 552 PRINTS Major sigma-70 factor signature 340 353 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pste5g01954 552 PRINTS Major sigma-70 factor signature 364 372 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pste5g01954 552 PRINTS Major sigma-70 factor signature 488 500 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pste5g01954 552 PRINTS Major sigma-70 factor signature 509 524 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pste5g01954 552 Gene3D - 389 466 IPR036388 -
Pste5g01954 552 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 449 548 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01954 Pste-Chr5 12394060 12398642 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01954 5 12394060 12398642 Pste5g01954 5 12394060 12398642 ECH
Pste5g01954 5 12394060 12398642 Pste4g02102 4 15370770 15376111 PCT
Pste4g02040 4 14958310 14966845 Pste5g01954 5 12394060 12398642 PCT