Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02040 AAAGAATGTAACGATTTTGAGAGTCAATTTAACTTGTCTCGGCTCTTTCTCAGCGACTGTGAAAAGGTTGCTGACACAGTCATGGATTAAGCTAAGCTTCTGCTTCTTTCTTCTGTGTCTCACTAACTGTAACAAGGTGAAACTGAAACCCGAACCGCGTGTTCCTTCCGGTCCGGGATCTGAATCTGCGGAATGTAATAATGTACTTCTTCTCAAGAAGGATCTAGAACAACCACACTCGCTAATGAAGAAAATCCGTCGCTGCCAGAGGATTCTCATCCTCTCTCTCCTTTCTCTCTCCGTCGTCGCTCCTCTCTTCTTCGTCCCTCACCGCCTCAACCTTCTCACTCTTCTCGGAAGAAGAGAGTTTCTCGAAGATTTGTATCGCGCTACATACAGGACAGATGCTTTCAAGTTAAATGCTGTAGAACAGGAAGGTGCTGAAGAATTAGAAGAGCCAAATCAAGTTGTTTATACAGAAAAAGATTTTGCTTCAACAATTAGTTACTATTCAGAAAAGAATAATGGTATTAAGGAATCTAGAATTGCAGGGTACAGAGCTACTGCTTTGGAAAGAAATGGATTCAACCCAAATAGAAGACACCAGGGAGCTCAGCAGAACGAATTATCCTTTATGGCTCAAGGTAAGAATATCCATGATTCACAGAGAATGTCAGAGAAGAATAATGAAGTGACAAATAAGAAGGTTCAAGAGATTAAGGATCAAATTATTTTAGCCAAAGCATACTTGAAAATTGCACCACCGAGCAGTAATTTACGCTTGAGGGATTTGGAGCAGCAAACAAGAGAGATGGAATTAGCAGTTGGAGAAGCTACCCAGGATTCAGATTTGTCAGTGAGTGCTTTGCAGAAAATGAGACACATGGAGGCTTCACTTTCTAAAATCTACCGTGCTTTCCCGGACTGCTCTGCTATGGCTGCTAAGCTCAATACAATGAAGCGTCAGACTGAAGAGCAAATCCGTTCTCAGCGACATCAAGCAACATATCTTGTTCATCTTGCTGCAAGGACCGCCCCAAAAGGCCTTCACTGTCTTTCTATGCGACTGACTGCAGAGTACTTTGCCTTGAGACCTGAGGACAGAAAGCTTCCAAATGAAAATAAAATTCGTCATCCTGACCTTTATCATTATGCTGTCTTCTCTGACAATGTTCTGGCATGTGCAGCTGTTGTTAACTCTACTATCTCTACTGCCAAGGAACAGGAGAAACTTGTTTTCCATGTATTGACCAAATCACTCAACTTACCTGCAATTTCAATGTGGTTCTTAATAAACCCGCCTGGCAAAGCTACAGTCCACGTACAGAGGATAAACAACTTTGAATGGTCGTCCAAGTACAGTACCTCCCAGGAAAACAATTCTGGCTATCCAAGATCCACTTCTGAATTAAACTACCTTCGTTTCTACCTTCCAGAAATTTTTCCTGATTTAAACAAGATTGTGCTTTTTGATCACGATGTGGTGGTGCAACAAGATCTCAGTGGACTGTGGAATATCAATATGAGGGGAAACGTAATAGGAGCAGTTGGAACTTGTCAGGAAGGAAAAATTCCATTCCATAGGATTGATATGTTCATAAACGTCTCAGATCCATTAATTGGAAACAAGTTTGATGTCAATGCTTGCACGTGGGCATTTGGGATGAACTTGTTTGATTTACATCAGTGGAGGAGACATAATTTAACTGCTGTCTATCACAGTTACTTGCAAATGGGTTTGTGGAACATTGGAAGTTTACCTTTAGGGTGGCTCACTTTCTATAACAAGACAGAGCTGTTGGATAGACAATGGCACGTTCTTGGCCTTGGTTATAGTTCAGATATCGATCGAAATGAGATTGAGGGAGCTGCCGTTATACACTATGATGGGCTTAGGAAGCCGTGGCTGGATATTGCAATGGGCAGATATAAAAGTTATTGGACCAAATTTTTGAACTTTGACAACATTTTTTTGCAACAGTGCAATCTCCAGGCATGACTCGATGAAGAGTCAGTGGTGTGCATTTTATCTGCTTGCAGATGCAATTGGTTGTTGTGTATATCAGTATATAATATTTGGTGTCTATTAATTTATGCCAACATTCTTTGCTATTTGGTGTGTATTTTTTGTGGGGCGTCACAAGGCCTGGATGTGATTCATGTTGAAGCAACTCATACTTGCGATTGTGTTATTTGAGAGATTTATTTGGAGACAAATGCAGATCTTGGACTCTTATCCAAACTCACGGTTGATTCCATGCGTCAGACTGGGAGCAGGCTAATTTACTTAGAAGACCAAATTTGCAAATTAGCGAGATGACGGTGGTGTTTTGAATTATTTCATGAGTATGATTTGATTTCTAGTCTTTATGAAGTAGAAAGGAATGACCACTTCTTTACGTAGTGTTTCCAATAGCCAAGATCTAGCTGTTTTTTCATTCTTGGTTATAGAATTTTAGAAGCTAAATTGAACAGGAGGGTATTGTTAGGAAGGCTAAAAAATCACAAATGAATGAAGAGGCAGACTTATTTTTAGTATTTACATTGAGTGATTTATCTGATATGCTGATTATTATTTAATTTTCATGTGGATGTGTTATTAC 2603 0.3995 MKKIRRCQRILILSLLSLSVVAPLFFVPHRLNLLTLLGRREFLEDLYRATYRTDAFKLNAVEQEGAEELEEPNQVVYTEKDFASTISYYSEKNNGIKESRIAGYRATALERNGFNPNRRHQGAQQNELSFMAQGKNIHDSQRMSEKNNEVTNKKVQEIKDQIILAKAYLKIAPPSSNLRLRDLEQQTREMELAVGEATQDSDLSVSALQKMRHMEASLSKIYRAFPDCSAMAAKLNTMKRQTEEQIRSQRHQATYLVHLAARTAPKGLHCLSMRLTAEYFALRPEDRKLPNENKIRHPDLYHYAVFSDNVLACAAVVNSTISTAKEQEKLVFHVLTKSLNLPAISMWFLINPPGKATVHVQRINNFEWSSKYSTSQENNSGYPRSTSELNYLRFYLPEIFPDLNKIVLFDHDVVVQQDLSGLWNINMRGNVIGAVGTCQEGKIPFHRIDMFINVSDPLIGNKFDVNACTWAFGMNLFDLHQWRRHNLTAVYHSYLQMGLWNIGSLPLGWLTFYNKTELLDRQWHVLGLGYSSDIDRNEIEGAAVIHYDGLRKPWLDIAMGRYKSYWTKFLNFDNIFLQQCNLQA 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02040 584 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 303 576 IPR029044 -
Pste4g02040 584 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 376 582 IPR029993 GO:0047262
Pste4g02040 584 Coils Coil 180 200 - -
Pste4g02040 584 Coils Coil 232 252 - -
Pste4g02040 584 Pfam Glycosyl transferase family 8 270 558 IPR002495 GO:0016757
Pste4g02040 584 SUPERFAMILY Nucleotide-diphospho-sugar transferases 301 581 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02040 Pste-Chr4 14958310 14966845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02040 1 584 Glycosyltransferase AT1G06780 47.712 0.0 552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02040 4 14958310 14966845 Pste4g02040 4 14958310 14966845 ECH
Pste5g01089 5 7152802 7162415 Pste4g02040 4 14958310 14966845 PCT
Pste4g02040 4 14958310 14966845 Pste5g01954 5 12394060 12398642 PCT