Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03456 AGGGAGGCAGAAGCGCAATCCTTGGTGAGCTGACCTGATGTCCCGCGCTCTCTGAGTTTTCTTTTCTATAAAAAAGCTTCTAACACTGGGCATTTTATTTGAACCATTCACTCCCATCCACCAATTCTCCATTTTCCTTGTTTCCCTTTCCGGGCCCTTATTTTATCCCGAGAAATGGAACTTCGCCGGCGAGCTCTCCGTCCCCCTCCCGCCGGCGAATCTCTGAAAAATGACCACCAGCAGCCGCAGTCCTACATCACCAACGCTGCCTTCTTCGGCCTCTTCTTCTCCGTGGCATACTTCCTCCTCCACCGATGGCGCGACAAGATCCGCACCTCCACTCCCCTCCACGTCGTTACGCTCTCCGAGATAGCCGCCATCCTCTCCCTCATCGCCTCCTTCCTTTACCTCATGGCCTTCTTCGGTATTACCTTCATCCTACATCCCTTCCTTAATTCCCGCTCTTCCTCTGATGACGACCTCGACCTCCACCTTTCCGTCCCTTCCCCTTCCCCCTGCCCTGCCTCCCTCCCCTCCAAACTCCCTCTCTCTCCACTCCCTTGCGACGACGACGACATCGTCCTCGCCGTCCTCTCCGGCTCCATCCCCTCCTACTCCCTCGAATCTCGCCTCGGCGATTCCCATCGCGCCGCCTCCATTCGTCGCCACGCCGTCGAGCGCATCACCGGCAAGTCCTTAAAAGGACTCCCCGTCGAAGGCTTCGATTACGACTCCATCCTTGGCCAGTGCTGTGAGATGCCCATCGGCTTCGTCCAGATCCCCGTCGGCGTCGCCGGACCCTTGCTTCTCGACGGCAAGGAGTTCACTGTTCCCATGGCCACCACCGAGGGCTGCTTGGTCGCTAGCACCAACCGAGGCTGCAAGGCCATTCACGCCTCCGGCGGTGCCTCCTCCATGCTCCTCCGTGATGCCATGACCCGAGCCCCCGTCGTTCGCTTCAACTCCGCCAAACGTGCCTCTCAGCTTAAGTTCTACCTCGAAGATCCTCTCAATTTCGATTCCCTTGCCGTCGTTTTCAACAAGTCAAGCAGGTTCGCGAAATTGCAAGATATTAAGGCTGCAATAGCAGGGAAGAATTTGTATATTAGATTCAGTTGCACTACGGGCGATGCCATGGGGATGAACATGGTTTCGAAAGGGGTCCAAAACGTGCTCTCTTTTCTTCAGAGCGATTTTCCTGATATGGATGTTATCGGGATATCAGGGAATTTCTGTTCGGATAAGAAGGCTGCAGCGGTGAACTGGATTGAGGGACGAGGAAAATCGGTGGTGTGTGAGGCTGTAATTAAGGAGGAGGTGGTTAAGAAAGTGTTGAAGACTAGTGTGGAGGCTCTGATGGAGCTTAACATGTTGAAGAACCTTACTGGATCTGCTATAGCCGGTGCACTTGGTGGGTTCAATGCTCATGCAAGTAATATTGTATCTGCTGTTTACTTGGCCACTGGACAGGATCCTGCACAGAATGTGGAGAGTTCTCACTGCATAACTATGATGGAAGCTGTGAATGATGGCAAGGACCTTCACATTTCTGTTACTATGCCTTCTGTTGAGGTGGGTACAGTTGGAGGGGGCACCCAACTCGCGTCTCAATCAGCTTGTCTTAATTTACTGGGTGTTAAGGGTGCCAGCAAAGAGTCCCCAGGTGCAAATTCAAGGCTTCTAGCAACCATAGTAGCAGGTTCAGTCCTGGCAGGGGAACTCTCACTCATGTCTGCAATAGCAGCAGGACAACTTGTTAATAGCCACATGAAATACAACAGATCTAGCAAGGATGTCTCCAAAATTGGTACCTAAGCTAGCTGGTCCCATCACAATACAAGAAAATTGTATGGCCAATAGTAAAATTAAGCTACTAGAAAAGGATATGCAATTGTATAATTATTAGCTTCAGAAGGACAATTAATTGGTGTTGGTGGGGAGTTAACCTGCAATTAGACTTCATTAATGTCTGGTCATTCATACGAGTGTGTTTTATCTGTTTCTGATGTGTACAGAACATGAATAAGACTTAGTTTTGTTACTTTTTCTTTTTTGTCTTTTGATAACATTGTTTTCACCTTATGTATGTGTTGTGTGTCAGTGTCATGATCTAAAGCAAATGTATCAAGGATGTCGCAGTTTAGTTTTTTTTTTTTTTATGTAG 2164 0.4963 MELRRRALRPPPAGESLKNDHQQPQSYITNAAFFGLFFSVAYFLLHRWRDKIRTSTPLHVVTLSEIAAILSLIASFLYLMAFFGITFILHPFLNSRSSSDDDLDLHLSVPSPSPCPASLPSKLPLSPLPCDDDDIVLAVLSGSIPSYSLESRLGDSHRAASIRRHAVERITGKSLKGLPVEGFDYDSILGQCCEMPIGFVQIPVGVAGPLLLDGKEFTVPMATTEGCLVASTNRGCKAIHASGGASSMLLRDAMTRAPVVRFNSAKRASQLKFYLEDPLNFDSLAVVFNKSSRFAKLQDIKAAIAGKNLYIRFSCTTGDAMGMNMVSKGVQNVLSFLQSDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEEVVKKVLKTSVEALMELNMLKNLTGSAIAGALGGFNAHASNIVSAVYLATGQDPAQNVESSHCITMMEAVNDGKDLHISVTMPSVEVGTVGGGTQLASQSACLNLLGVKGASKESPGANSRLLATIVAGSVLAGELSLMSAIAAGQLVNSHMKYNRSSKDVSKIGT 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03456 546 MobiDBLite consensus disorder prediction 1 22 - -
Pste1g03456 546 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 355 531 - -
Pste1g03456 546 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 254 369 IPR009023 -
Pste1g03456 546 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 128 202 - -
Pste1g03456 546 CDD HMG-CoA_reductase_classI 133 536 IPR004554 GO:0004420|GO:0005515|GO:0008299
Pste1g03456 546 Gene3D - 253 369 IPR009023 -
Pste1g03456 546 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 312 326 IPR023076 GO:0004420
Pste1g03456 546 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 467 474 IPR023076 GO:0004420
Pste1g03456 546 Gene3D - 203 523 IPR023074 GO:0004420
Pste1g03456 546 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 132 536 IPR002202 GO:0004420|GO:0015936
Pste1g03456 546 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 253 369 - -
Pste1g03456 546 Gene3D - 129 202 IPR023282 GO:0004420
Pste1g03456 546 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 455 476 IPR002202 GO:0004420|GO:0015936
Pste1g03456 546 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 401 427 IPR002202 GO:0004420|GO:0015936
Pste1g03456 546 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 219 239 IPR002202 GO:0004420|GO:0015936
Pste1g03456 546 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 350 375 IPR002202 GO:0004420|GO:0015936
Pste1g03456 546 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 192 213 IPR002202 GO:0004420|GO:0015936
Pste1g03456 546 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 310 328 IPR002202 GO:0004420|GO:0015936
Pste1g03456 546 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 21 540 IPR002202 GO:0004420|GO:0015936
Pste1g03456 546 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 132 536 IPR004554 GO:0004420|GO:0005515|GO:0008299
Pste1g03456 546 Pfam Hydroxymethylglutaryl-coenzyme A reductase 160 536 IPR002202 GO:0004420|GO:0015936
Pste1g03456 546 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 521 534 IPR023076 GO:0004420
Pste1g03456 546 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 129 525 IPR009029 GO:0015936|GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03456 Pste-Chr1 16104893 16110959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03456 4 542 Lipid Metabolism Gene Families AT1G76490 72.563 0.0 810
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00855 8 4406768 4410391 Pste1g03456 1 16104893 16110959 ECH
Pste1g03456 1 16104893 16110959 Pste1g03456 1 16104893 16110959 ECH
Pste1g03456 1 16104893 16110959 Pste7g02039 7 18716838 18720882 PCT