Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00855 AAGCAGAGCAAGCTGAGCATTTGTTGGCTGTGAAACACATGAAAAGCACCTCTCATTATCAAACATAGTCCCGTTTGTAAGTTCCTTCATACCTCTCATTGGAACGATGGAACTCCACCAAGCCACAGGGCACCGGCGAGTGAAGAGGGAGCCATCACCTCCGAAGGCCTCGGACGCCCTCCCTCTCCCGCTCTACCTCACCAACGCCATCTTCTTCACCCTCTTCTTCTCCGTCGCCTACTTCCTCCTCCACCGCTGGCGTGACAAGATCCGCAGCCACACCCCTCTCCACGTCGTCACGCTCTCCGAGATCGCCGCCATCTTCTCCCTCATCGCCTCCTTCATCTACCTCCTCGGCTTCTTCGGCATCGACTTCGTCCAGTCCTTCATCTCCCGCGCCTCCCACGACGTCTGGGACCTCGACGACGCCGTCACTGAGCCCGAGCCTGAGCCCGAGCCCGAGCCCGAGCCCTCTCAGTCCCAGTCCCAGTCCGACGACGACGACCTCGTGGCCTCCGTCGTGGAGGGCCTCACGCCCTCCTACGCGCTCGAATCCCGCCTGGGCGACTGTCGGCGGGCGGCGTCCATTCGGCGGGCGGCGCTGCAGAGAATAACGGGGCGCTCGCTGGAGGGGCTGCCGCTGGAGGGGTTCGACTACGAGTCAATTCTGGGGCAGTGCTGCGAAATGCCAGTGGGTTACGTTCAGATTCCGGTGGGGGTGGCGGGGCCTTTGCTTCTGGACGGGTTCGAGTACACGGTGCCCATGGCCACTACGGAGGGGTGCCTGGTGGCGAGCACCAACCGAGGCTGCAAGGCCATCTATGCCAGTGGTGGGGCCTGCACTGTGGTTTTGAGGGACTGCATGTCCCGTGCTCCTGTTGTTAGGTTCTCCACTGCCAAGAGGGCTGCCCAATTGAAGTTCTTCCTCGAGGATCCTCTCAATTTTGATACTTTGTCTCTTGTTTTCAACAGATCGAGTAGATTTGCCAGGCTACAAGGTATTCAGTGTGCTATGGCTGGGAAGAATATTTATTTGCGATTCACTTGTAGCACCGGTGATGCCATGGGGATGAATATGGTTTCCAAAGGGGTCCAAAACGTCCTTGATTTTCTTCAGAATGATTTCCCTGACATGGATGTTATTGGCATTTCTGGAAATTATTGTTCGGACAAGAAACCTGCTGCAGTAAATTGGATTGAGGGACGTGGAAAATCAGTCGTTTGTGAAGCAATTATCAAAGAAGAAGTGGTGAAGAAGGTATTGAAGACCAACGTGTCTGCCCTGGTGGAGCTTAACATGCTCAAAAACCTTGCTGGTTCTGCCATTGCTGGTGCTCTTGGTGGATTTAATGCCCATGCTAGTAACATCGTTTCTGCCATCTTTATAGCCACTGGTCAAGATCCAGCTCAAAATGTTGAGAGTTCCCATTGCATAACCATGATGGAAGCCGTCAATGAAGGGAGGGACCTTCATATTTCAGTGACTATGCCTTCCATCGAGGTGGGTACTGTTGGTGGTGGAACTCAACTAGCATCTCAGTCTGCTTGCTTGAATTTACTTGGTGTGAAGGGTGCAAGCAAGGAGTCACCAGGATCAAACTCAAGACTTTTGGCCACCATTGTTGCTGGATCTGTTTTAGCAGGAGAGCTTTCTCTGATGTCTGCCATTGCAGCAGGGCAGCTAGTCAACAGCCACATGAAGTACAACAGATCAAGCAAAGATGTAACCAAAATATCATCTTGATGTGGTTGCAGTCATTACTTGATGTGGAGTCTAGTTTTTTATTTTTTTTAACGAAGTGGAGTCTAGAATAAAAAATTGAGGATCTTTGCGCGCAGAAAGGGAATTTGGGAAGGAAAATGGAAATCGGTAGATTAGATTGTTGGCATCCATGTGTGGCTCTTACGTTTCTGTATGTAGATCTTTTATTATTTAGAGAGGAAATTGGAGAGTTCTACTCTACTTGTTCCCTGTCCCCTTCTGTATCCTTCCTTTCCTGCACACGTTTCATTGATTATTCTGCCGAGCCGTTGAATGGGTGTTAACACTCGTTTTCTTTTCAACCAAGACATTTGACGTGTTGTATTGTAATTCTTTTCCCCTATTAAATATGCTTAGCTTATCTACCGTTGCTCTCGGTATCTCTCTGATCATTATATTCTGGGTAATTGAATGAGTTGATAAATTTTATCTTGTC 2198 0.5018 MELHQATGHRRVKREPSPPKASDALPLPLYLTNAIFFTLFFSVAYFLLHRWRDKIRSHTPLHVVTLSEIAAIFSLIASFIYLLGFFGIDFVQSFISRASHDVWDLDDAVTEPEPEPEPEPEPSQSQSQSDDDDLVASVVEGLTPSYALESRLGDCRRAASIRRAALQRITGRSLEGLPLEGFDYESILGQCCEMPVGYVQIPVGVAGPLLLDGFEYTVPMATTEGCLVASTNRGCKAIYASGGACTVVLRDCMSRAPVVRFSTAKRAAQLKFFLEDPLNFDTLSLVFNRSSRFARLQGIQCAMAGKNIYLRFTCSTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNYCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKKVLKTNVSALVELNMLKNLAGSAIAGALGGFNAHASNIVSAIFIATGQDPAQNVESSHCITMMEAVNEGRDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLVNSHMKYNRSSKDVTKISS 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00855 545 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 400 426 IPR002202 GO:0004420|GO:0015936
Pste8g00855 545 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 309 327 IPR002202 GO:0004420|GO:0015936
Pste8g00855 545 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 454 475 IPR002202 GO:0004420|GO:0015936
Pste8g00855 545 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 191 212 IPR002202 GO:0004420|GO:0015936
Pste8g00855 545 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 349 374 IPR002202 GO:0004420|GO:0015936
Pste8g00855 545 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 218 238 IPR002202 GO:0004420|GO:0015936
Pste8g00855 545 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 127 524 IPR009029 GO:0015936|GO:0016616
Pste8g00855 545 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 357 530 - -
Pste8g00855 545 CDD HMG-CoA_reductase_classI 134 535 IPR004554 GO:0004420|GO:0005515|GO:0008299
Pste8g00855 545 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 466 473 IPR023076 GO:0004420
Pste8g00855 545 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 12 539 IPR002202 GO:0004420|GO:0015936
Pste8g00855 545 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 252 368 - -
Pste8g00855 545 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 127 201 - -
Pste8g00855 545 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 311 325 IPR023076 GO:0004420
Pste8g00855 545 Gene3D - 252 368 IPR009023 -
Pste8g00855 545 MobiDBLite consensus disorder prediction 1 21 - -
Pste8g00855 545 Pfam Hydroxymethylglutaryl-coenzyme A reductase 159 535 IPR002202 GO:0004420|GO:0015936
Pste8g00855 545 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 131 535 IPR002202 GO:0004420|GO:0015936
Pste8g00855 545 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 253 368 IPR009023 -
Pste8g00855 545 Gene3D - 202 522 IPR023074 GO:0004420
Pste8g00855 545 MobiDBLite consensus disorder prediction 108 130 - -
Pste8g00855 545 MobiDBLite consensus disorder prediction 1 18 - -
Pste8g00855 545 Gene3D - 120 201 IPR023282 GO:0004420
Pste8g00855 545 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 132 535 IPR004554 GO:0004420|GO:0005515|GO:0008299
Pste8g00855 545 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 520 533 IPR023076 GO:0004420
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00855 Pste-Chr8 4406768 4410391 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00855 9 541 Lipid Metabolism Gene Families AT1G76490 77.737 0.0 884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00855 8 4406768 4410391 Pste1g03456 1 16104893 16110959 ECH
Pste8g00855 8 4406768 4410391 Pste8g00855 8 4406768 4410391 ECH