Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g02039 ATTAAAAAAAAAAAAAAGAAAAAGGAAATAAGTGCGAGAAAGAAGGGTTGCACGCTGTCCGCGTGGGCAATGGTGCAGAGCGCCAATCTCTCTGTTTCTATAAAAGACCTTCTAAACACTCGGTCTTCCGTTCAACTTTCAACTCTGTTTCACAAAGCTTCTTCTTTTATACCTTTTTTTTTTCCCCTGTTCCTTTTTCTCTGTTTTCCCCTGAGCTTCTGGGTTCTTCATTCTCCGTTTTCCATTCTCCTTGGAAAATGGACCTTCGCCGCCGCAAGACCCAGAAGCTCAACAGTGCTACCGCTGCCACCACCGCCGTTGTCTCTCCATCGCAGGCCCTCCGTACCCTCTACCTCACCAACGCCCTCTTCTTCGCCGTCTTCTTCTCTGTCGCCTACTTCCTCCTCCACCGGTGGCGCGAGAAGATCCGCGACGCCACCCCTCTCCACACCGTGACACCGGCAGAAACCGCCGCCATAGTATCGCTGGTCGCCTCCGCTGTCTACCTCCTCGGCTTCTTCGGGGTCGCCTCCCGCGATGACCTCACCGACGAGGACATCATCCTCCGGGAAGACTCCCCTGCATGTCCCGCCAACTTTCTCGCTTTCCCGCCAAAATCTGTCGACAGCGTGGCGAAGGATTCACCGAATATTCCTTCACCACTTGTCGACAGGACATTAGTAGGAAAGGAAAAGGAAACAACATTATTAAAATCAGCAGATTCAGCTGACGTGGCAGTGCCTGTTACTTTATCCAGCCTGGAAGAGGACATCGTTCAGGCTGTAGTGTCAGGCTCTGTCCCGTCTTACTCGCTTGAGTCACGGCTCGGCGACACGCGTCGGGCTGCCACAGTCCGGCGAGAGGCGGTGCAGAGACTGACAGGAAAATCCCTCGAGGGATTACCATTAGAGGGGTTCGACTACGAGTCGATATTGGGGCAGTGTTGCGAGATGCCGATTGGGTTTGTGCAGATTCCGGTGGGAGTTGCAGGACCTTTGTTGTTGGATGGGAAGGAATACACGGTGCCTATGGCCACCACCGAAGGGTGTCTCGTTGCGAGCACGAACAGAGGGTGCAAAGCTATCTACCTTTCCGGTGGAGCTTCCTCTGTTTTGCTCAGAGATGGCATGACCAGAGCACCCGTTGTGAGGTTACCCTCCGCTCAGCGTGCTGCAGAGTTGAAGTTCTTCTTGGAGGACCCTCTCAACTTCGATTCACTTGCTGTCGTTTTCGATAAGTCAAGCAGATTTGCCAGGTTGCAGAATATTCAGTGTGCTATTGCTGGCAAGAATTTGTACATGAGATTCCGATGCAGCACCGGTGATGCAATGGGAATGAACATGGTGTCCAAAGGTGTTCAAAATGTCCTGGGTTTTCTTCAGGCAGACTTCCCTGACATGGATGTTATTGGAATCTCTGGAAATTTCTGTTCGGACAAGAAAGCTGCAGCTGTGAACTGGATTGAAGGACGCGGCAAGTCTGTGGTGTGTGAGGCTATAATCAAGGAGGATGTGGTGAAGAAGGTGTTGAAGACCAGTGTGGAAGCCCTAGTTGAGCTTAACATGCTCAAAAACCTTACTGGCTCAGCTGTGGCTGGTGCACTTGGTGGATTCAATGCCCATGCTAGCAATATAGTGTCTGCTATCTACATTGCCACTGGTCAGGATCCTGCCCAGAATGTCGAGAGTTCTCACTGCATAACCATGATGGAAGCTATCAATGATGGCAAGGACCTTCACATTTCTGTTGGTACTGTTGGAGGGGGAACACAACTCGCATCTCAATCAGCATGTCTTAATTTACTTGGTGTCAAGGGAGCAAGTAAAGAATCTCCTGGTGCAAACGCTAGGCAACTGGCCACCATCATAGCCGGTTCGGTCCTTGCTGGGGAGCTATCACTCATGTCTGCAATTGCAGCAGGACAACTAGTTAAGAGCCACATGAAGTACAACAGATCTAGCAGGGATATGTCTACAATTGCCCAATGATCAAGCCACAGTACAATTACACTGTGTTAATGACTAATAAGCAAACCATCAAACGACAAGAATGACTAATAAAGAATTGTTATAGATGGTGAAGGAAGTGATGGTTGGCATCTTCCATGAGCAGAACAAGCTCCCCAAAAGCAAGTGGGTTACTTGGCATTCATTGAATATCTGCTTCGTGAGGTATCTTCTCTTATGGAGACTGTACGGAGGGACTTGAAATAGAGATTGGAAGAAAAGAAAACATCAAAACAAGAGCCACACTTTTGGGATTAGAGTTCTATAGTTTACCAAAAGACAAATCAGTTGTGTTGTGTGTTGTTACTGCTTCAATGATGTGGTATTTTAGCATGTAGTGTTTTTGTGTCGTAATCTCCGTTAATTTTTAATTGTAGCAAAGAGCAGAGATAGCTCCAAATGGGATGTAGAGTTGTTAATAATAGTCTCTGGTTGCTAAACATTTTTCTCAGTCTCCAATTGTGTCTTTTTGGGTTGTTGGTATGTTGTTACTTACTTTGGTCCAA 2512 0.4797 MDLRRRKTQKLNSATAATTAVVSPSQALRTLYLTNALFFAVFFSVAYFLLHRWREKIRDATPLHTVTPAETAAIVSLVASAVYLLGFFGVASRDDLTDEDIILREDSPACPANFLAFPPKSVDSVAKDSPNIPSPLVDRTLVGKEKETTLLKSADSADVAVPVTLSSLEEDIVQAVVSGSVPSYSLESRLGDTRRAATVRREAVQRLTGKSLEGLPLEGFDYESILGQCCEMPIGFVQIPVGVAGPLLLDGKEYTVPMATTEGCLVASTNRGCKAIYLSGGASSVLLRDGMTRAPVVRLPSAQRAAELKFFLEDPLNFDSLAVVFDKSSRFARLQNIQCAIAGKNLYMRFRCSTGDAMGMNMVSKGVQNVLGFLQADFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAIIKEDVVKKVLKTSVEALVELNMLKNLTGSAVAGALGGFNAHASNIVSAIYIATGQDPAQNVESSHCITMMEAINDGKDLHISVGTVGGGTQLASQSACLNLLGVKGASKESPGANARQLATIIAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSRDMSTIAQ 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g02039 576 Pfam Hydroxymethylglutaryl-coenzyme A reductase 197 566 IPR002202 GO:0004420|GO:0015936
Pste7g02039 576 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 167 555 IPR009029 GO:0015936|GO:0016616
Pste7g02039 576 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 551 564 IPR023076 GO:0004420
Pste7g02039 576 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 12 569 IPR002202 GO:0004420|GO:0015936
Pste7g02039 576 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 165 239 - -
Pste7g02039 576 CDD HMG-CoA_reductase_classI 170 566 IPR004554 GO:0004420|GO:0005515|GO:0008299
Pste7g02039 576 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 229 250 IPR002202 GO:0004420|GO:0015936
Pste7g02039 576 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 256 276 IPR002202 GO:0004420|GO:0015936
Pste7g02039 576 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 387 412 IPR002202 GO:0004420|GO:0015936
Pste7g02039 576 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 438 464 IPR002202 GO:0004420|GO:0015936
Pste7g02039 576 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 347 365 IPR002202 GO:0004420|GO:0015936
Pste7g02039 576 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 169 566 IPR002202 GO:0004420|GO:0015936
Pste7g02039 576 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 290 406 - -
Pste7g02039 576 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 497 504 IPR023076 GO:0004420
Pste7g02039 576 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 290 406 IPR009023 -
Pste7g02039 576 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 170 566 IPR004554 GO:0004420|GO:0005515|GO:0008299
Pste7g02039 576 Gene3D - 165 239 IPR023282 GO:0004420
Pste7g02039 576 Gene3D - 290 406 IPR009023 -
Pste7g02039 576 Gene3D - 240 553 IPR023074 GO:0004420
Pste7g02039 576 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 393 561 - -
Pste7g02039 576 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 349 363 IPR023076 GO:0004420
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g02039 Pste-Chr7 18716838 18720882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g02039 2 572 Lipid Metabolism Gene Families AT1G76490 67.517 0.0 787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g02039 7 18716838 18720882 Pste7g02039 7 18716838 18720882 ECH
Pste1g03456 1 16104893 16110959 Pste7g02039 7 18716838 18720882 PCT