Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4042 ATGAGCGGTTCCAGATTCATAAAGTGTGTCACAGTAGGCGATGGAGCCGTTGGCAAGACTTGTTTGCTTATCTCCTATACCAGCAACACTTTCCCAACGGACTATGTGCCCACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGATGGGAGCACTATAAATTTGGGGTTGTGGGATACAGCTGGCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCCGATGTTTTCTTGCTTGCCTTTTCTCTCATAAGTAGAGCTAGTTATGAGAATATTGCCAAGAAATGGATTCCTGAGTTAAGGCATTATGCTCCCGGTGTTCCAATTATTCTCGTTGGAACAAAACTTGATCTTCGAGATGATAACCAGTTCTTTCAAGACCATCCTGGTGCTGCACCAATCACCACAGCACAGGGTGAGGAACTCAGAAAACTTATTGGTGCTCCAGTTTACATAGAATGTAGTTCCAAAACACAAAAGAATGTGAAGGCTGTTTTCGATGCGGCCATCAAAGTAGTTCTACAGCCGCCAAAACAAAAGAAACCTAAGAGAAAGGGGCATAAAGCCTGTTCTATTTTGTGA 594 0.4276 MSGSRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTINLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDNQFFQDHPGAAPITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDAAIKVVLQPPKQKKPKRKGHKACSIL* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4042 197 CDD Rop_like 6 178 - -
Psa7g4042 197 PANTHER RAC-LIKE GTP-BINDING PROTEIN 5 1 197 - -
Psa7g4042 197 PANTHER RHO FAMILY GTPASE 1 197 IPR003578 GO:0005525|GO:0007264
Psa7g4042 197 Gene3D - 5 193 IPR027417 -
Psa7g4042 197 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Psa7g4042 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Psa7g4042 197 TIGRFAM small_GTP: small GTP-binding protein domain 7 171 IPR005225 GO:0005525
Psa7g4042 197 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
Psa7g4042 197 ProSiteProfiles small GTPase Rab1 family profile. 2 197 - -
Psa7g4042 197 ProSiteProfiles small GTPase Ras family profile. 2 197 IPR001806 GO:0003924|GO:0005525
Psa7g4042 197 Pfam Ras family 8 178 IPR001806 GO:0003924|GO:0005525
Psa7g4042 197 PRINTS Transforming protein P21 ras signature 7 28 - -
Psa7g4042 197 PRINTS Transforming protein P21 ras signature 30 46 - -
Psa7g4042 197 PRINTS Transforming protein P21 ras signature 47 69 - -
Psa7g4042 197 PRINTS Transforming protein P21 ras signature 109 122 - -
Psa7g4042 197 PRINTS Transforming protein P21 ras signature 155 177 - -
Psa7g4042 197 SMART ras_sub_4 4 180 - -
Psa7g4042 197 SMART rab_sub_5 7 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4042 Psa-Chr7 332679087 332684660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4042 7 180 EF-hand Containing Proteins AT5G27540 28.736 2.26e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4042 K04392 - gmx:100785464 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4042 7 332679087 332684660 Psa7g4042 7 332679087 332684660 ECH
Psa7g4042 7 332679087 332684660 Psa2g3472 2 383278995 383280923 ECH
Psa5g1978 5 153114038 153116411 Psa7g4042 7 332679087 332684660 ECH
Psa7g4042 7 332679087 332684660 Psa4g2377 4 191629659 191634046 ECH