Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1978 ATGAACGAACGATTGAACGCCAAATTCTCGCCCCCCCAAGATGTCTACTTGAAACAGAACCAACTGGAGGAGAGGGTCCTCAGGTTTATCAAATGTGTTACTGTTGGTGATGGAGCTGTCGGCAAAACTTGTTTGCTTATTTCATACACCAGCAATACTTTCCCCACGGATTATGTGCCGACAGTTTTTGACAATTTCAGTGCGAATGTGGTTGTTAATGGGAGCATTGTTAATCTGGGTTTGTGGGATACTGCTGGACAAGAGGATTATAACAGATTAAGACCATTGAGTTACCGTGGTGCCGATGTTTTCATATTGGCTTTCTCTCTCATAAGCAAGGCTAGTTATGAAAATGTCTCCAAAAAGTGGATTCCAGAGTTAAAGCATTATGCACCTGGTGTCCCCATAATTCTGGTTGGGACAAAGCTTGCTCAAAGCGTTGGGCATTCCGAGGAAGTTGGCTCGATAGCAAACAACCATTGCAGACCTGTTCGTGAATTTGGACGATGTTACAAATCAGCTTATCTAAGGAATGGATACAGAGATATGATGAAATTAGCAACAACTTCGCTACTTAATCAAACGTCTAAAGATGCTCATTTCCGGTCCACTGTGCCAAGTAAAAGCTCGATTCCCAGGGTAATAGATAGAGAAGAGGAGAAAGCGTTACATATCGGAAAATGGGAGGAATATGAGGTGTGTGTTGAGTTGTAA 714 0.4258 MNERLNAKFSPPQDVYLKQNQLEERVLRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSIVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLAQSVGHSEEVGSIANNHCRPVREFGRCYKSAYLRNGYRDMMKLATTSLLNQTSKDAHFRSTVPSKSSIPRVIDREEEKALHIGKWEEYEVCVEL* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1978 237 PRINTS Transforming protein P21 ras signature 30 51 - -
Psa5g1978 237 PRINTS Transforming protein P21 ras signature 53 69 - -
Psa5g1978 237 PRINTS Transforming protein P21 ras signature 70 92 - -
Psa5g1978 237 PRINTS Transforming protein P21 ras signature 132 145 - -
Psa5g1978 237 ProSiteProfiles small GTPase Rho family profile. 23 204 - -
Psa5g1978 237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 145 IPR027417 -
Psa5g1978 237 TIGRFAM small_GTP: small GTP-binding protein domain 30 145 IPR005225 GO:0005525
Psa5g1978 237 Pfam Ras family 31 143 IPR001806 GO:0003924|GO:0005525
Psa5g1978 237 ProSiteProfiles small GTPase Rab1 family profile. 23 234 - -
Psa5g1978 237 SMART ran_sub_2 35 237 - -
Psa5g1978 237 SMART rab_sub_5 30 177 - -
Psa5g1978 237 SMART rho_sub_3 32 194 IPR001806 GO:0003924|GO:0005525
Psa5g1978 237 Gene3D - 27 207 IPR027417 -
Psa5g1978 237 ProSiteProfiles small GTPase Ras family profile. 25 237 IPR001806 GO:0003924|GO:0005525
Psa5g1978 237 PANTHER RHO FAMILY GTPASE 28 144 IPR003578 GO:0005525|GO:0007264
Psa5g1978 237 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 28 144 - -
Psa5g1978 237 SMART ras_sub_4 27 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1978 Psa-Chr5 153114038 153116411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1978 30 143 EF-hand Containing Proteins AT5G27540 25.439 2.14e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1978 K04392 - gmx:100812451 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1978 5 153114038 153116411 Psa2g3472 2 383278995 383280923 ECH
Psa5g1978 5 153114038 153116411 Psa4g2377 4 191629659 191634046 ECH
Psa5g1978 5 153114038 153116411 Psa7g4042 7 332679087 332684660 ECH
Psa5g1978 5 153114038 153116411 Psa5g1978 5 153114038 153116411 ECH