Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3472 ATGAACGAACGATTGAACGCCAAATTCTCGCCCCCCCAAGATGTCTACTTGAAACTGAACCAACTGGAGGAGAGGGTCCTCAGGTTTATCAAATGTGTTACTGTTGGTGATGGAGCTGTCGGCAAAACTTGTTTGCTTATTTCATACACCAGCAATACTTTCCCCACGGATTATGTGCCGACAGTTTTTGACAATTTCAGTGCGAATGTGGTTGTTAATGGGAGCATTGTTAATCTGGGTTTGTGGGATACTGCTGGACAAGAGGATTATAACAGATTAAGACCATTGAGTTACCGTGGTGCCGATTGGATTCCAGAGTTGAAGCCATTATGCACCTGGTGTCCCCATAATTCTGGTTGGGACAAAGCTTGTTGGTTTCTTATTATATTTTGCCATTTGTATGAGATAGACCTTCGAGATGATAAGCAGTTCTGCATAGACCATCCTGGTGCCGTTCCCATTACCACAGCTCAGGGAGAAGAGCTGAGGAAGCTGATTAATGCACCAGCTTACATTGAATGCAGTTCAAAAACACAGGAGAACGTGAAGGCAGTGTTTGACGCAGCCATAAGAGTTGTTCTTCAACCACCAAAACAGAAGAAAAAGAAGGGTAAAGCACAAAAGGCCTGTTCAATATTGTAA 642 0.4346 MNERLNAKFSPPQDVYLKLNQLEERVLRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSIVNLGLWDTAGQEDYNRLRPLSYRGADWIPELKPLCTWCPHNSGWDKACWFLIIFCHLYEIDLRDDKQFCIDHPGAVPITTAQGEELRKLINAPAYIECSSKTQENVKAVFDAAIRVVLQPPKQKKKKGKAQKACSIL* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3472 213 ProSiteProfiles small GTPase Rab1 family profile. 23 213 - -
Psa2g3472 213 SMART ras_sub_4 27 196 - -
Psa2g3472 213 TIGRFAM small_GTP: small GTP-binding protein domain 30 101 IPR005225 GO:0005525
Psa2g3472 213 Pfam Ras family 31 102 IPR001806 GO:0003924|GO:0005525
Psa2g3472 213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 194 IPR027417 -
Psa2g3472 213 ProSiteProfiles small GTPase Rho family profile. 23 193 - -
Psa2g3472 213 PRINTS Transforming protein P21 ras signature 30 51 - -
Psa2g3472 213 PRINTS Transforming protein P21 ras signature 53 69 - -
Psa2g3472 213 PRINTS Transforming protein P21 ras signature 70 92 - -
Psa2g3472 213 PRINTS Transforming protein P21 ras signature 171 193 - -
Psa2g3472 213 PANTHER RHO FAMILY GTPASE 28 213 IPR003578 GO:0005525|GO:0007264
Psa2g3472 213 SMART rho_sub_3 32 196 IPR001806 GO:0003924|GO:0005525
Psa2g3472 213 Gene3D - 27 103 IPR027417 -
Psa2g3472 213 Gene3D - 104 208 IPR027417 -
Psa2g3472 213 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 28 213 - -
Psa2g3472 213 SMART rab_sub_5 30 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3472 Psa-Chr2 383278995 383280923 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3472 K04392 - gmx:100812451 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3472 2 383278995 383280923 Psa4g2377 4 191629659 191634046 ECH
Psa2g3472 2 383278995 383280923 Psa2g3472 2 383278995 383280923 ECH
Psa5g1978 5 153114038 153116411 Psa2g3472 2 383278995 383280923 ECH
Psa7g4042 7 332679087 332684660 Psa2g3472 2 383278995 383280923 ECH
Psa2g3472 2 383278995 383280923 Psa4g2377 4 191629659 191634046 PCT