Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2996 ATGAAAGCAAAGATCTTAAAGTTGTCAAAAATGTTGACCAAAAAAGGCAAAGTGAACAAGGAAGAACCACCTTTGGATCTTATAGAAGCTTTTTTCAACTTCTCTAATGGTGAAAACCACATGTCAAAGGATCAACTACTTGGATTCATGGTGGAATATCAAGGAGAAGAAAACTGCACCTTATTGGATTTGGAACCAATCATTGAAAAGGTTTTGCAAATGGGAAGTTCTAGTTCTAGCATTGAAACTAGAAATATTGAAGGACTCAGTATTGATGACTTTGTCAATTTTTTGCTTCTTGATGATTTCAATGCTCCTTTAAAAGATGAGGTACATCATGATATGAAAGCTCCCTTGTCACATTATTTCATGTACACAGGACACAATTCCTATCTTACTGGAAATCAATTAACTAGTTTGAGCAGTGATGTGCCTATTATAGAGGCTTTAAAACAAGGTGTTCGAGTTATTGAACTTGATTTATGGCCATCTTCTACTAAAGATGGTGGTATTAAAGTTGTTCATGGAAGGACTCTTACCACTCCAGTTGCGCTAACCAAATGTTTGGAATCCATAAAGAAACATGCTTTTGTCAAATCTGATTTTCCAGTCATTCTCACTTTGGAAGATCACCTAACACCAAAACTTCAGGCTAAATTTGCAGAAATGGCAATTCAAATATTTGGAGAAATGCTTTATTGTCCTGAGACAGATTATTTAACAGAATTTCCTTCACCAGCCTCACTCAAAAATATGGTAGTTATATCAACTAAACCACCAAAGGAATCTCCTCAATCAGAAGGAACCAGACATGATGTGTCAAATGGAAGTGAATCTTCTGAAGATGAATCATGGGAATTGCAAGATTCTATGGCTAAAGTGAAAACTATTGACAAGAATGTCAGTGACGAAGAGAAGCTAGAAGATATAAACACAAGTGATTACAAAGTAAACCAGCAAAGTACACGCGGATACAAACATTTGATTACAATCCATGGTGGAAAATCAGAAGGTACTATGAAAGATAGACTAAAAGTTGATGGTGGTAAAGTTAGAAGACTAAGCTTGAGTGAGAAGAAACTCAAAACAGCTTCCGAATCTCATGGACCTGACCTGATTAGATTCACACAGAAAAATATCCTCAGAATTTTTCCTAGAGGAGAACGCGTTCAATCCTCAAATTTTAAGCCACATTTAGGATGGATGTATGGAGCTCAGATGGTTGCATTCAATATGCAGGGTCATGGAAAATCGCTCCGGTTGATGCAAGGGATGTTCAAAGCAAATGGAGGGTGTGGTTATGTGAAAAAACCTGAATTTCTAATTCAAAAAGGTGCACATAATGAGGCTTTTGATCCCAAAAAAACACTACCAGTGAAGCAGATATTGAAAGTAAAAGTATACAAAGGAGTTGGTTGGAGATCAGATTTCAGTCGAACGCACTTCGATCGATTCTCTCCACCCGACTTTTACACAAAGGTTTGTATTGTTGGAGTGGGAGCTGATAGTGTGAAGAAGAAAACAAGTGTAAAGACGGACAACTGGTATCCTGTTTGGGACGAAGAGTTCGAATTCCGTTTAACTGTTCCGGAGCTCGCGTTGCTTCGGATCGAAGTAAAAGATAAAGATAAGACAACAGATGATTTTGCTGGACAGACATGTTTGCCTGTATCAGAACTAAAATGCGGATTTCGATCGGTTCCATTGTGTGACTTAAAGGGAAAGAAATTTAACTCTGTCAAGCTTTTACTTCGCTTCCAACTTGAAACTTAA 1773 0.3739 MKAKILKLSKMLTKKGKVNKEEPPLDLIEAFFNFSNGENHMSKDQLLGFMVEYQGEENCTLLDLEPIIEKVLQMGSSSSSIETRNIEGLSIDDFVNFLLLDDFNAPLKDEVHHDMKAPLSHYFMYTGHNSYLTGNQLTSLSSDVPIIEALKQGVRVIELDLWPSSTKDGGIKVVHGRTLTTPVALTKCLESIKKHAFVKSDFPVILTLEDHLTPKLQAKFAEMAIQIFGEMLYCPETDYLTEFPSPASLKNMVVISTKPPKESPQSEGTRHDVSNGSESSEDESWELQDSMAKVKTIDKNVSDEEKLEDINTSDYKVNQQSTRGYKHLITIHGGKSEGTMKDRLKVDGGKVRRLSLSEKKLKTASESHGPDLIRFTQKNILRIFPRGERVQSSNFKPHLGWMYGAQMVAFNMQGHGKSLRLMQGMFKANGGCGYVKKPEFLIQKGAHNEAFDPKKTLPVKQILKVKVYKGVGWRSDFSRTHFDRFSPPDFYTKVCIVGVGADSVKKKTSVKTDNWYPVWDEEFEFRLTVPELALLRIEVKDKDKTTDDFAGQTCLPVSELKCGFRSVPLCDLKGKKFNSVKLLLRFQLET* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2996 590 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 354 440 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Psa5g2996 590 SUPERFAMILY PLC-like phosphodiesterases 113 443 IPR017946 GO:0006629|GO:0008081
Psa5g2996 590 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 113 258 - -
Psa5g2996 590 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 462 587 IPR035892 -
Psa5g2996 590 MobiDBLite consensus disorder prediction 258 286 - -
Psa5g2996 590 Pfam Phosphatidylinositol-specific phospholipase C, X domain 115 258 IPR000909 -
Psa5g2996 590 MobiDBLite consensus disorder prediction 264 278 - -
Psa5g2996 590 SMART plcx_3 113 258 IPR000909 -
Psa5g2996 590 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 1 590 IPR001192 GO:0035556
Psa5g2996 590 PRINTS Phospholipase C signature 118 136 IPR001192 GO:0035556
Psa5g2996 590 PRINTS Phospholipase C signature 144 164 IPR001192 GO:0035556
Psa5g2996 590 PRINTS Phospholipase C signature 242 259 IPR001192 GO:0035556
Psa5g2996 590 PRINTS Phospholipase C signature 380 401 IPR001192 GO:0035556
Psa5g2996 590 PRINTS Phospholipase C signature 401 419 IPR001192 GO:0035556
Psa5g2996 590 PRINTS Phospholipase C signature 555 565 IPR001192 GO:0035556
Psa5g2996 590 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 355 441 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Psa5g2996 590 SMART C2_3c 462 569 IPR000008 -
Psa5g2996 590 Gene3D Phosphatidylinositol (PI) phosphodiesterase 110 454 IPR017946 GO:0006629|GO:0008081
Psa5g2996 590 SUPERFAMILY EF-hand 16 115 IPR011992 -
Psa5g2996 590 CDD C2_PLC_like 460 589 - -
Psa5g2996 590 Pfam C2 domain 462 560 IPR000008 -
Psa5g2996 590 Gene3D - 23 109 - -
Psa5g2996 590 Gene3D C2 domain 457 590 IPR035892 -
Psa5g2996 590 ProSiteProfiles C2 domain profile. 443 571 IPR000008 -
Psa5g2996 590 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 1 590 - -
Psa5g2996 590 SMART plcy_3 325 442 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2996 Psa-Chr5 230567064 230571343 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2996 7 589 Acyl Lipid Metabolism Gene Families AT2G40116 54.967 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2996 K05857 - gmx:100803435 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2996 5 230567064 230571343 Psa2g0764 2 46968770 46971876 ECH
Psa2g1344 2 102463633 102469838 Psa5g2996 5 230567064 230571343 ECH
Psa5g2996 5 230567064 230571343 Psa5g2996 5 230567064 230571343 ECH
Psa5g2996 5 230567064 230571343 Psa2g0774 2 47291095 47294920 PCT