Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2876 ATGGTGTTTAAGAAGAGGGCAAATAATGGATTCACTGGCTTTCAAGTTCCCGTTATTCCTCGAGCTCCTAGATCTGCAAGACGGAGGGGCCCATTGAAAAAAACGGTTGACGATGGTCAGGTTTGCGCGTTTGAAATATTGGCATCTATAGCTGGGAAGCTATTGGAGGAGGGTGAAAGTTCGGCGTCTAGCAATGCTTCAGAAGGAAATAGCCAAGGCGTTATTGTGGAAAATCGACAAGATGAAGTTAAACCATTGATAACGGAGGGTATTCACCCGGGAAGCTGTATAGAGAGTATTTTCACAAGAGAGGTAGCCTCAGAAAACCGTGATCAGAAACCTATTCTGCACGCCAAGTCCGATTTTTCATCGGAAAAAGGTGAAAAAGCTAATGTGAAGACCGAAACTGTTGAATCGGATGATAAATATGTGAGTTATACTAATAGATTAGTAGTAGAAGCACCTGAAAATTTCAGGGAGTCTTATAACAGGAAAATAAAGAAAGGATTCAGATCCGATAAATATGGTTTGAAAGACCGGTTGGAATTGTATATGTCTCCTTCTCTGGTCGACTCGAAAGTTAATGTAAAATATCCATTTCATAGGAAGCCATTTCCCACTAATTCCTTTACCAAGGATGGGAATGACATTAAGTTAGATTTTAGAGATGATGACGAAAACTTTATAAGGTGTACAAAGGTTTGCGCCAAGTCGAAGACTTTTAGGTCCCCACGACGCATGGCACACCGCAGAATCAAGAATCTGCTGTCTTCTAAATACTGGAACGTTGCTCCAAAATTGAAGGACTGTGAACTTTCTAGATCTGATCTAGAAGTACCTCTTTATCGTAAGAGGAAGACTTCTCATGGATCCGACAAATCTCGCCACAACACTATTATTAAGCGGAGGAAATTCTTTGACCGGGTTTCTGGTGTAACTTCTGATGGAGGATTCAGCAGTGAAAGTGTGTCTAATTCGCCCGAGAAAGGAAATGATGGACACAAGCCTAGCTCTTCTGCAAAAATACAAGTGACCGAGGAATCTCGTGTGAAGTTTAGCATCAAGTCATTTAGAATACCGGAGCTTTACATCGAGGTTCCCGAAACTGCAACCGTCGGTTCACTAAAGAGGACAGTCATGGAGGCGGTAATGGCTATAATCGAAGGTGGTATGCATGTCGGTGTTCTTCTTCAGGGTGAAGCAATCGGAGATGACAATAGAACACTTGAGCAGACAGGTTTATCTTGCAATGAGAATCTCGATACCCTTAGTTTCATGTTGGAGCCTAGTTCAATACTAGCGTCTCCAGTTTCTTGTATCGGTGATCCTTCTTCTCAATGCGATACATCCGAACCTACCAGGTCTCCAGAAACTCTTGCGTTAGATTCAGGGATAACCGATACTATAGATGACTCCAATTTGCCGATAATTCCAGGAAACCTAGTGGAAAATAACCATGATTCTGCTTATTCTCCCACTGACACCATAGTTGACAAGATAACACCAGATTCCAAAGCGATAGTTGCTCTTCCGGCTAGTAACGAAGCATTAGCTGTGGTACCGCTGAGTCAGAAAATCAAGCGTTCTGAGTTTGTTCATCGTCGAACCAGGAGACCGTTCTCTGTGACCGAGGTTGAAGCACTTGTTCATGCAGTTGAAGAACTCGGGACTGGAAGGTGGCGCGATGTTAAGTTGCGAGCTTTTGATAATGCAGATCATAGAACTTATGTTGACCTAAAGGATAAATGGAAAACACTAGTGCACACTGCAAAAATCTCCCCTCAACAAAGGAGAGGAGAGCCAGTACCTCAGGAGCTGTTGGACAGGGTTTTAGGAGCACATGCTTATTGGTCCCAGCACCAAATCAAGCAACATGGGAAACATCAAAGTGGAACATTGAAGATTACAGAAGCTTCAGCCGAAAGGGTGTCGATTCAGGTGTAG 1944 0.4311 MVFKKRANNGFTGFQVPVIPRAPRSARRRGPLKKTVDDGQVCAFEILASIAGKLLEEGESSASSNASEGNSQGVIVENRQDEVKPLITEGIHPGSCIESIFTREVASENRDQKPILHAKSDFSSEKGEKANVKTETVESDDKYVSYTNRLVVEAPENFRESYNRKIKKGFRSDKYGLKDRLELYMSPSLVDSKVNVKYPFHRKPFPTNSFTKDGNDIKLDFRDDDENFIRCTKVCAKSKTFRSPRRMAHRRIKNLLSSKYWNVAPKLKDCELSRSDLEVPLYRKRKTSHGSDKSRHNTIIKRRKFFDRVSGVTSDGGFSSESVSNSPEKGNDGHKPSSSAKIQVTEESRVKFSIKSFRIPELYIEVPETATVGSLKRTVMEAVMAIIEGGMHVGVLLQGEAIGDDNRTLEQTGLSCNENLDTLSFMLEPSSILASPVSCIGDPSSQCDTSEPTRSPETLALDSGITDTIDDSNLPIIPGNLVENNHDSAYSPTDTIVDKITPDSKAIVALPASNEALAVVPLSQKIKRSEFVHRRTRRPFSVTEVEALVHAVEELGTGRWRDVKLRAFDNADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLDRVLGAHAYWSQHQIKQHGKHQSGTLKITEASAERVSIQV* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2876 647 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 534 591 IPR017930 -
Psa5g2876 647 Gene3D - 526 629 - -
Psa5g2876 647 CDD SANT_TRF 538 588 - -
Psa5g2876 647 PANTHER TELOMERE-BINDING PROTEIN, PUTATIVE-RELATED 1 638 - -
Psa5g2876 647 SMART sant 536 589 IPR001005 -
Psa5g2876 647 MobiDBLite consensus disorder prediction 317 342 - -
Psa5g2876 647 SUPERFAMILY Homeodomain-like 538 619 IPR009057 -
Psa5g2876 647 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 638 IPR031105 -
Psa5g2876 647 ProSiteProfiles Myb-like domain profile. 532 587 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2876 Psa-Chr5 218962807 218967483 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2876 - - gmx:100814318 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2876 5 218962807 218967483 Psa2g0935 2 66537201 66541555 ECH
Psa3g3190 3 269544796 269549551 Psa5g2876 5 218962807 218967483 ECH
Psa5g2876 5 218962807 218967483 Psa5g2876 5 218962807 218967483 ECH