Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2722 ATGGCAGCACCCATTCTCCCATTAACCACATTTTCTCTCACAAAACCCAACACAGAAACAACACCAAAACACCAAACTACTACCTTTACAGTTTCACCTTTACTTCATATCCTTTCTCTCATACCCAAATGCACCAATCTCACAGACCTTAAACAAATCCAAGCTTACTCCATTAAGACCCATCTTCAAAACAACACCAATGTCATCACAAAGTTCATTAATTTCTGCACTTCCAACCCCACAGAAGCTTCCATGGACCACGCATACCACCTGTTCGACCAAATTACTCTACCAAAAATTGTTCTTTTCAACAGCATGGCACGCGGGTATGCTCGCGTTAACGACCCTCTTAGAGCAATGATTCTCTTTTCTCACGTTCTCTGCTCCGGCCTTGTTCCTGATGACTACACATTTTCCTCACTTCTCAAGGCCTGTTCAAAGGTTAAGGCTTTGAAAGAAGGGAAACAACTGCATTGTTTTGCTTTGAAACTTGGGGTTAGTGATAATATATATGTTGTTCCGACACTTATTAATATGTATACTGCTTGTGGTGACATTGATGCTTCTAGAAGGGTTTTTGATAAGATTGAAGAGCCTTGTGTTGTTGCATATAATGCAATCATTACTAGTTTAGCTAGGAATAGTCAACCTAATGAGGCATTGGCTTTGTTTAGAGAATTGCAGGAGAGCGGTCTTGAGGCGAGTGATGTTACCATGCTTGTTGTTCTTTCGTCCTGTGCTTTGCTTGGATCATTGGATTTGGGGAGGTGGATGCATGAGTATGTTAAGAAGTATGGGTTTGATCGACATGTGAAGGTAAATACAACTCTTATAGATATGTATGCTAAATGTGGGAGCTTGGATGATGCTGTTAATGTGTTTAGAGACATGCCTAAGAGAGATACGCAGGCTTGGTCGGCGATGATCATGGCTTATGCAACACACGGGGATGGTTTCCAAGCAATATCGACGTTGAAAGAAATGAAGAAAGAAAAAGTGCAGCCTGATGAGATAACGTTTTTAGGTATGTTGTATGCATGTAGCCATAACGGATTGGTAGAAGAAGGTTTTGAATATTTTCGTAGTATGACTGATGAGTACGGGATTGTTCCTAGTATCAAACATTATGGGTGTATGGTGGATTTGCTTGGTAGAGCTGGAAGATTGGACGAAGCCTATACATTCTTAGATGAATTACCCATTAAGCAAACACCGATTCTGTGGCGAACATTGCTATCTGCTTGTAGTAGTCACGGCAATGTTGAAATGGGAAAACAAGTAATTGAGAGATTATTTGAATTGGATGATTCACATGGTGGAGATTATGTTATTTTATCGAACTTGTGTGCAAGATATGGAAGATGGGATGATGTGAATCACTTGCGGAAAATGATGTTAAACAAAGGAGCCGTGAAAATTCCTGGTTGTAGCTCTATAGAGGTCAACAACATTGTGCACGAATTCTTTGCTGGGGACGGAGTTCATTCCATTTCTACAACATTGCACCATGAACTTGATGAGTTGATGAAGGAATTGAAATTGGCTGGGTATGTACCTGACACATCACTAGTCTTTCACGCAGACATGGAAGATGAGGAGAAAGAAATTATTCTTCGATATCACAGTGAGAAATTGGCCATTACTTTTGGACTTGTGAATACGCCGCCTGGAACAACAATCCGTGTTGTCAAGAACCTTAGAGTTTGTGGAGATTGCCATAACGCTGCTAAATTTATATCATTGATATTTGGCAGGCAAATTATTCTCAGAGATGTACAAAGATTTCACCATTTCAAAGATGGGAAATGCTCTTGTGGTGATTACTGGTAG 1830 0.4027 MAAPILPLTTFSLTKPNTETTPKHQTTTFTVSPLLHILSLIPKCTNLTDLKQIQAYSIKTHLQNNTNVITKFINFCTSNPTEASMDHAYHLFDQITLPKIVLFNSMARGYARVNDPLRAMILFSHVLCSGLVPDDYTFSSLLKACSKVKALKEGKQLHCFALKLGVSDNIYVVPTLINMYTACGDIDASRRVFDKIEEPCVVAYNAIITSLARNSQPNEALALFRELQESGLEASDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRHVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAMIMAYATHGDGFQAISTLKEMKKEKVQPDEITFLGMLYACSHNGLVEEGFEYFRSMTDEYGIVPSIKHYGCMVDLLGRAGRLDEAYTFLDELPIKQTPILWRTLLSACSSHGNVEMGKQVIERLFELDDSHGGDYVILSNLCARYGRWDDVNHLRKMMLNKGAVKIPGCSSIEVNNIVHEFFAGDGVHSISTTLHHELDELMKELKLAGYVPDTSLVFHADMEDEEKEIILRYHSEKLAITFGLVNTPPGTTIRVVKNLRVCGDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2722 609 Pfam DYW family of nucleic acid deaminases 516 609 IPR032867 GO:0008270
Psa2g2722 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 300 IPR002885 -
Psa2g2722 609 Pfam PPR repeat family 301 347 IPR002885 -
Psa2g2722 609 Pfam PPR repeat family 98 146 IPR002885 -
Psa2g2722 609 Pfam PPR repeat family 199 246 IPR002885 -
Psa2g2722 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Psa2g2722 609 PANTHER BNAA02G26650D PROTEIN 29 595 - -
Psa2g2722 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 99 133 IPR002885 -
Psa2g2722 609 Gene3D Tetratricopeptide repeat domain 21 158 IPR011990 GO:0005515
Psa2g2722 609 Gene3D Tetratricopeptide repeat domain 271 504 IPR011990 GO:0005515
Psa2g2722 609 SUPERFAMILY TPR-like 271 439 IPR011990 GO:0005515
Psa2g2722 609 Pfam E motif 418 480 IPR046848 -
Psa2g2722 609 Pfam PPR repeat 275 300 IPR002885 -
Psa2g2722 609 Pfam PPR repeat 376 399 IPR002885 -
Psa2g2722 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Psa2g2722 609 Gene3D Tetratricopeptide repeat domain 159 253 IPR011990 GO:0005515
Psa2g2722 609 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 29 595 - -
Psa2g2722 609 TIGRFAM PPR: pentatricopeptide repeat domain 275 301 IPR002885 -
Psa2g2722 609 TIGRFAM PPR: pentatricopeptide repeat domain 202 234 IPR002885 -
Psa2g2722 609 TIGRFAM PPR: pentatricopeptide repeat domain 304 337 IPR002885 -
Psa2g2722 609 TIGRFAM PPR: pentatricopeptide repeat domain 339 372 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2722 Psa-Chr2 311491920 311494577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2722 25 609 Glycoside Hydrolase AT3G49170 38.475 4.39e-144 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2722 - - gmx:100817794 1016.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2722 2 311491920 311494577 Psa2g2722 2 311491920 311494577 ECH
Psa2g2722 2 311491920 311494577 Psa4g1188 4 84808974 84811626 PCT
Psa4g3008 4 244377931 244380657 Psa2g2722 2 311491920 311494577 PCT