Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3008 ATGCCTTTACCCTCTGCAACCACCATCATCAACATTAATCACTTGTTAAACCAATCCAATGCTATCTCTCACTCTCACCTCAAACAAATCCATGCTCAAATGCTTCGCACCATTCACGCAAACCATCCACAATCCCTTTTTCTCTACACAAGACTTCTTCACCACTCCTCCTTCACAAATCTCAACTACACTGCTCGTGTTTTTCATCACTTCAACAATCCAAATTCCTTTATGTGGAACATTCTTATACGAGCCTACGCCAAATCCACAAGCCACAAACATCGTGCTATTGTTCTTTACAGAGATGCTCGTGTTTTTCATCACTTCAACAATCCAAATTCCTTTATGTGGAACATTCTTATACGAGCCTACGCCAAATCCACAAGCCACAAACATCGTGCTATTGTTCTTTACAGAGAAATGATAACAGAACAAGAAAATGAAGTCTTTCCTGATAACCACACTTACCCGTTTGTTCTTAAGGCTTGTGCTTACTTGTTTTGTTTATTTGAAGGGAAACAGGTTCATGCCCATGTTTTGAAACTTGGGTTTGAGTTGGATAGTTATATTTGTAATAGTTTGATTCATTTATATGCTTCTTGTGGGTGTTTGGAAATGGCTCGGAAAGTGTTTGAGAAAATGTGTGAAAGGAGGAATGAAGTTTCGTGGAATGTAATGATTGATTCTTATGCAAAGGCTGGAGAGTATGATACTGTTTTGAAAATGTTTTGTGAGATGATGAAGGTGTATGATCCTGATTGTTACACAATGCAGAGTGTTATTAATGCCTGTGCTGGTTTAGGTGCTCTTTCTTTGGGTATGTGGGTTCATGCGTATATTTTGAAAAAGTGTGATAAGAATGTGGCTTGTGATGTTTTGGTCAACACTTGTTTGGTTGATATGTATTGCAAATGTGGATCTTTGGAAATTGCTAAGCAGGTGTTTGAAGGAATGTCTTATAGAGATGTGAGTTCATGGAATTCAATAATTTTGGGTTTTGCCGTCAATGGGAAAGCTCAGGAAGCATTGGATTATTTTCTCTGTATGGTAAAGGTAGAGAAAGTTGAGCCAAACTCTATCACCTTTGTTGGTGTGTTGAGTGCATGTAATCATAGGGGGTTTGTTAATGAGGGGTTAATGTATTTTGAATTGATGACTAAGGAATACAATATTGAACCAAGTTTGGTGCATTATGGATGTCTTGTTGATCTTTATGCTAGAGCTGGACATATCCAAGAAGCTTTGAATGTGGTTTCAAAAATGTCTGTAAAGCCAGATGGTGTAATTTGGAGGAGTCTTTTAGATGCTTGTTATAAGCAACATGCAAGTGTTGAGCTAAGTGAAGCAATGGCAAAGCAAGTTTTTGAATCAGAGGGTAGTGTTTGTGGTGGTGCTTATGTGCTTTTGTCAAAAGTTTATGCTTCGGCTAGTAGGTGGAATGATGTAGGGTTGCTTAGAAAGCTAATGAATGATAAGGGTGTGAGCAAAGAGCCTGGTTGTAGTTTAATAGAGATAAATGGTGTTGCTCATGAATTTTTAGCTGGGGACACCACTCATCCAGAGAGTAAAGATATATACAAGTTTATGAATGAAATTGAAGAGAGGCTAGAATCAATAGGGTATTTACCTGACTATTCAGGGGCGGCGTCGGTTAATGATATTAATGAAGGAAAACAGAATACTATGAGGTTGCATAGTGAGAGATTGGCCATAGCTTTTGGGCTTTTGAATTCAAAACCAGGCATGCCAATAAGAGTATTTAAGAATCTTAGAGTGTGTAATGATTGCCACAAGAATTTGGCTATTGATACTACAGCAACAATAGGAGTTGATATTGTTCAAACTTTGCCGCAAACTGATCATGTAAAGGTCTGCCAGAGTTATGATTTGGTGTCTTGTACTTGGTCCACTCTTGTGCAAAGTGAAATTTTGGGTTTCTTTTTCCAGTTAAAAAGTGATGGTTGTAAGAGTAACTCTAAGAGTTGGTTTGGTCTCTGTACTGGTAGTGATAGTTGGGTTAAGTTTGATGTAGCAAGAGTTTTTGTGTCTTTTGACAATTCAGCAATTTTTCGGGTACTGGTGGGTCCTCTTTCACATGATAACACTCACATTGAATACATGTATAGCCAGCTAAATGCATAA 2142 0.38 MPLPSATTIININHLLNQSNAISHSHLKQIHAQMLRTIHANHPQSLFLYTRLLHHSSFTNLNYTARVFHHFNNPNSFMWNILIRAYAKSTSHKHRAIVLYRDARVFHHFNNPNSFMWNILIRAYAKSTSHKHRAIVLYREMITEQENEVFPDNHTYPFVLKACAYLFCLFEGKQVHAHVLKLGFELDSYICNSLIHLYASCGCLEMARKVFEKMCERRNEVSWNVMIDSYAKAGEYDTVLKMFCEMMKVYDPDCYTMQSVINACAGLGALSLGMWVHAYILKKCDKNVACDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVNGKAQEALDYFLCMVKVEKVEPNSITFVGVLSACNHRGFVNEGLMYFELMTKEYNIEPSLVHYGCLVDLYARAGHIQEALNVVSKMSVKPDGVIWRSLLDACYKQHASVELSEAMAKQVFESEGSVCGGAYVLLSKVYASASRWNDVGLLRKLMNDKGVSKEPGCSLIEINGVAHEFLAGDTTHPESKDIYKFMNEIEERLESIGYLPDYSGAASVNDINEGKQNTMRLHSERLAIAFGLLNSKPGMPIRVFKNLRVCNDCHKNLAIDTTATIGVDIVQTLPQTDHVKVCQSYDLVSCTWSTLVQSEILGFFFQLKSDGCKSNSKSWFGLCTGSDSWVKFDVARVFVSFDNSAIFRVLVGPLSHDNTHIEYMYSQLNA* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3008 713 PANTHER BNAC04G18690D PROTEIN 103 577 - -
Psa4g3008 713 PANTHER BNAC04G18690D PROTEIN 18 102 - -
Psa4g3008 713 Pfam E+ motif 510 535 IPR046849 -
Psa4g3008 713 Pfam DYW family of nucleic acid deaminases 540 601 IPR032867 GO:0008270
Psa4g3008 713 Gene3D Tetratricopeptide repeat domain 280 366 IPR011990 GO:0005515
Psa4g3008 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 357 IPR002885 -
Psa4g3008 713 Pfam E motif 441 504 IPR046848 -
Psa4g3008 713 PANTHER OS01G0913400 PROTEIN-RELATED 103 577 - -
Psa4g3008 713 PANTHER OS01G0913400 PROTEIN-RELATED 18 102 - -
Psa4g3008 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 249 IPR002885 -
Psa4g3008 713 Pfam PPR repeat family 219 265 IPR002885 -
Psa4g3008 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 217 IPR002885 -
Psa4g3008 713 Gene3D Tetratricopeptide repeat domain 169 271 IPR011990 GO:0005515
Psa4g3008 713 Gene3D Tetratricopeptide repeat domain 9 166 IPR011990 GO:0005515
Psa4g3008 713 Gene3D Tetratricopeptide repeat domain 367 511 IPR011990 GO:0005515
Psa4g3008 713 TIGRFAM PPR: pentatricopeptide repeat domain 189 217 IPR002885 -
Psa4g3008 713 TIGRFAM PPR: pentatricopeptide repeat domain 221 248 IPR002885 -
Psa4g3008 713 Pfam PPR repeat 296 320 IPR002885 -
Psa4g3008 713 Pfam PPR repeat 396 422 IPR002885 -
Psa4g3008 713 Pfam PPR repeat 190 217 IPR002885 -
Psa4g3008 713 Pfam PPR repeat 325 351 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3008 Psa-Chr4 244377931 244380657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3008 104 623 Glycoside Hydrolase AT3G49170 33.397 2.79e-96 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3008 - - gmx:100791183 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3008 4 244377931 244380657 Psa4g3008 4 244377931 244380657 ECH
Psa4g3008 4 244377931 244380657 Psa2g2722 2 311491920 311494577 PCT